3300001322: Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A26-65cm)- 6 month illumina

Overview

Basic Information

• IMG/M Taxon OID: 3300001322
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0083722 | Gp0055463 | Ga0011785
• Sample Name: Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A26-65cm)- 6 month illumina
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Tennessee
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 18952048
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Permafrost And Active Layer Microbial Communities From Mcgill Arctic Research Station (Mars)
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost And Active Layer Microbial Communities From Mcgill Arctic Research Station (Mars)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → active permafrost layer → permafrost
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Axel Heiberg Island, Nunavut, Canada
• Coordinates
  • Lat. (^o): 79.26
  • Long. (^o): -90.46
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002065	Metagenome / Metatranscriptome	597	Y
F028661	Metagenome / Metatranscriptome	191	Y
F046558	Metagenome	151	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
A2665W6_107897	All Organisms → cellular organisms → Bacteria	582
A2665W6_110392	All Organisms → cellular organisms → Bacteria	1135
A2665W6_128864	Not Available	679

Sequences

Scaffold ID	Protein ID	Family	Sequence
A2665W6_107897	A2665W6_1078971	F002065	AKWNPLALKLLMWVMGVLIVMGSGLGFIGSTFFAFDTWAGVSASVAGIAFGAGIMIAGFDPEGNVSWVRALIIYAILEVVYQIFNQITVGRFDIVPLVIAVIVAAMLLWLYPNKAQLWMSSSNSMAHKA*
A2665W6_110392	A2665W6_1103922	F046558	TNTTRESLSLERLGDTVHFTAAVDTFSTTTQGTIGPTQFVQLPVQLSGTLMGDSLIVETDSVAEKCSSVSSALLADLHNLLIRFPTPVSQGSGWRNSVELKACQGMIPTTSRITRSYIVSGEIAYQGDLVLVVQRTDSIQAHGEGAQQQHPLTLDAKGTGNAVYYVSPRDGRIVRLNTEQDLDLAITVSGKIHRFKQTSKQDFVAVR*
A2665W6_128864	A2665W6_1288641	F028661	MHLRRLIGLSGVLSYLSLPGALVAQVAGGVEFYGALDNAAPITRTIGGLSLSVGTPYLGIRGSGGLGISSLATDAFAANQGPSNLVWATNADLMFGPVNARLGEGFMPYAFGGLGLESSAQPATFTDAIRTWSYGGGL