Scaffold B570J14230_10164362

Overview

Basic Information

• Taxon OID: 3300001282
• Scaffold ID: B570J14230_10164362
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - Practice 20APR2010 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 627
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, WI
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015095	Metagenome / Metatranscriptome	257	Y
F023592	Metagenome / Metatranscriptome	209	Y
F060716	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J14230_101643621	F023592	AGG	MXSMDILIGLAACGMGFMFMVIGYSIGFKHGHGEGFVRGRAXAXALKEKELI*
B570J14230_101643622	F015095	N/A	MEGAQLIIGIAVGSCTILGLGAGLVRHLVKYYLSELRPDGNGGHNLRGRIDHMESRVERMDNKIDKIYEILLETRLAK*
B570J14230_101643623	F060716	N/A	LYMSGITDPKVLANAFIAGLIGPLLKALQPSEGQFGVTK*