Scaffold B570J13884_100033

Overview

Basic Information

• Taxon OID: 3300001266
• Scaffold ID: B570J13884_100033
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 05MAY2010 deep hole epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16785
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (83.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045097	Metagenome / Metatranscriptome	153	Y
F059006	Metagenome / Metatranscriptome	134	Y
F068832	Metagenome / Metatranscriptome	124	Y
F070111	Metagenome / Metatranscriptome	123	N

Sequences

Protein ID	Family	RBS	Sequence
B570J13884_10003312	F068832	GAGG	MIEDSAKNNLLEIMKWGGTACVIVAATCRAFEFHTVDLILSIIGAGVWGIAAYEMKDKPLMVVNGFITAILLYGVVK*
B570J13884_10003318	F070111	AGAAGG	MTKISVELDIDQFDKLVVEELIRTRQTFLNDLGANNHVFVWGDQEADDAEIQKHIDSADQLIKWFGTPEQIEEVFGNEDG*
B570J13884_10003319	F045097	GAGG	MKTDDIKGKMIEAIPYVAVFGIAALAVYGITKIVQSLDDVDIPLDWGQDAYLTELCRNSRED*
B570J13884_10003328	F059006	GAGG	MRPTFTDAERAEIESVKDIAQKKLRELLADLPVDTYPFFKDCILTGGCFASLLLDEEVHDWDVYLRDSVTVSRFESFVLSDTPTLNEVAGVTSGYTLITKVGGKLVTANAITFKNGLQVITRTGKEHRETFDFVHTMPYFDMAKQQLFISRQQYDSIKNKKLIVNPKHLVLVNQWRADKFMGRGWSFR*