Scaffold B570J13889_100001

Overview

Basic Information

• Taxon OID: 3300001255
• Scaffold ID: B570J13889_100001
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 72296
• Total Scaffold Genes: 117
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 93 (79.49%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000441	Metagenome / Metatranscriptome	1136	Y
F000852	Metagenome / Metatranscriptome	860	Y
F008814	Metagenome / Metatranscriptome	327	Y
F040629	Metagenome / Metatranscriptome	161	Y
F060917	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J13889_10000124	F000441	AGGAGG	MSDDYINDQLNKAQQLLWGGSETENIEAHNIISKLIKDRIEQVS*
B570J13889_10000125	F000852	GGA	MTTKREYLKQQGITVGVRGRFSGAAKVALAEAEAKGVKFTAEAPVKKAK*
B570J13889_10000134	F060917	GGA	MINWLVNKLFWWSPLRDAIFDEVHMYDHIDSIMNDPDSMNTGSLSWMEGDMWYGWTYNSNARRYYFDDIGNKSLIGLWEDQWLREADEGVTK*
B570J13889_10000155	F008814	GGA	MAEITVLDGIIKDLGQELYQKWYNGLAQEDITPEASEAMAKNAGETTFWVIQNFMIRFNEAAEALKDK*
B570J13889_10000167	F040629	AGG	VNTYIVKIEVLASVDAFSEADAKDYISDIFNVDDEIKSVKIIKIAKSS*