NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold J055_10126773

Scaffold J055_10126773


Overview

Basic Information
Taxon OID3300001199 Open in IMG/M
Scaffold IDJ055_10126773 Open in IMG/M
Source Dataset NameLotic microbial communities from nuclear landfill site in Hanford, Washington, USA - IFRC combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterPacific Northwest National Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)975
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Hymenostomatida → Tetrahymenina → Tetrahymenidae → Tetrahymena → Tetrahymena thermophila(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Lotic → Lotic Microbial Communities From Nuclear Landfill Site In Hanford, Washington, Usa

Source Dataset Sampling Location
Location NameHanford, Washington, USA
CoordinatesLat. (o)46.371184Long. (o)-119.275414Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F082766Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
J055_101267733F082766N/AMAAQIQANFEKLFQIAVPIYCPVEDNKGTLYIVSTNGEVYEVNEGTPKPSFTTGGQPTSLVFDSEGSAFIADMGY*

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