Basic Information | |
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Taxon OID | 3300001199 Open in IMG/M |
Scaffold ID | J055_10126773 Open in IMG/M |
Source Dataset Name | Lotic microbial communities from nuclear landfill site in Hanford, Washington, USA - IFRC combined assembly |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Pacific Northwest National Laboratory |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 975 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Hymenostomatida → Tetrahymenina → Tetrahymenidae → Tetrahymena → Tetrahymena thermophila | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lotic → Unclassified → Lotic → Lotic Microbial Communities From Nuclear Landfill Site In Hanford, Washington, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Hanford, Washington, USA | |||||||
Coordinates | Lat. (o) | 46.371184 | Long. (o) | -119.275414 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F082766 | Metagenome / Metatranscriptome | 113 | Y |
Protein ID | Family | RBS | Sequence |
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J055_101267733 | F082766 | N/A | MAAQIQANFEKLFQIAVPIYCPVEDNKGTLYIVSTNGEVYEVNEGTPKPSFTTGGQPTSLVFDSEGSAFIADMGY* |
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