Scaffold JGI11823J13286_1009478

Overview

Basic Information

• Taxon OID: 3300001164
• Scaffold ID: JGI11823J13286_1009478
• Source Dataset Name: Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 688
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: El Dorado National Forest, Georgetown, California, USA
• Coordinates
  • Lat. (^o): 38.88
  • Long. (^o): -120.64

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035913	Metagenome / Metatranscriptome	171	N
F083283	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI11823J13286_10094781	F083283	N/A	AYYSGSPEYAGTVNVVRLAATGDVAVTRVELDIAREPSAVE*
JGI11823J13286_10094782	F035913	GGAG	MTDPRDFDRRMDMGRMDLDRPIEMEHRMGSPTPWGWIAGAVFVIVMLALVFTSSEGTRTANNEAGSPAATTTAPPAITVPPPETTGQGGQRGQ*