NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold JGI10220J13317_10542300

Scaffold JGI10220J13317_10542300


Overview

Basic Information
Taxon OID3300001139 Open in IMG/M
Scaffold IDJGI10220J13317_10542300 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Wisconsin, Switchgrass soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)553
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameIowa, USA
CoordinatesLat. (o)43.303333Long. (o)-89.3325Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038164Metagenome166Y
F066612Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
JGI10220J13317_105423001F038164N/AKAHFEEVFGNAGLLLLMGALVSGVLDSPSVSGAWLVALLATAGLVMGASLRLGRSLYFAQGVLAAYVGLLRLLFAPFSHAESSVPFFVAALLGVGALTLIFAAHKRMIER*
JGI10220J13317_105423002F066612GGAMRLDSVAWERAAEVREAAEGWLRAGTIDRSTHAAVLNAYPDPCVTPSAVWRILTAVMVTAVMLCTLGAVWIAAQ

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.