Scaffold JGI11949J13268_1001895

Overview

Basic Information

• Taxon OID: 3300001123
• Scaffold ID: JGI11949J13268_1001895
• Source Dataset Name: Marine microbial communities from the Deep Atlantic Ocean - MP2969
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2479
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosarchaeum → Candidatus Nitrosarchaeum limnium (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: South of Funchal, North Atlantic Ocean
• Coordinates
  • Lat. (^o): 32.08
  • Long. (^o): -17.26
  • Depth (m): 4002.6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F076187	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI11949J13268_10018958	F076187	N/A	MPDCINPALTVSVIICPDGLVSVAITHFFEFISTEKFFENFKTSRNVKSFPNIPLIPDTDIFNASNLDTLFINSERK*