NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold SMH020_1005748

Scaffold SMH020_1005748


Overview

Basic Information
Taxon OID3300001109 Open in IMG/M
Scaffold IDSMH020_1005748 Open in IMG/M
Source Dataset Name04YSMH020
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1527
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Spring → Thermal Spring Microbial Communities From Shoshone Spring, Yellowstone National Park

Source Dataset Sampling Location
Location NameSeven Mile Hole Yellowstone National Park
CoordinatesLat. (o)44.75491405Long. (o)-110.41586031Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006070Metagenome / Metatranscriptome382N
F011233Metagenome / Metatranscriptome293N

Sequences

Protein IDFamilyRBSSequence
SMH020_10057481F011233N/AFLPFVKGWRYHVPQLQTQLLSGIPVSFTGTYTVLNGEFPGYFVAAAIGTTDPNFIARGSADGLTIIEVTVGELRDARVYRNQMGEPNILSYGSYIRGFPLPVYALSLSGDGLPFYQSIKIEVVPRNQPALITGFAANIIEIYDVNLFKQSTKQFFESVTPSSSTAQLTASPSAPPSFVANEVVSTRLPVKVT*
SMH020_10057482F006070AGGVTLYPYLVVDLPITDANTHTYRTNPLNPLTPTQPGISLVRLGESVPSVRAFNIYVYNYANASLSVQVIANENAKNYQYGYLLDGLDYQSETGYPDFNVGSPVTVPAGSLSTPSVQAVQSDFYTSAAERYLSVALTYSTAPSAGFVRAHIDLFYQGF*
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