3300001109: 04YSMH020

Overview

Basic Information

• IMG/M Taxon OID: 3300001109
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0087272 | Gp0059802 | Ga0012380
• Sample Name: 04YSMH020
• Sequencing Status: Permanent Draft
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 38435298
• Sequencing Scaffolds: 7
• Novel Protein Genes: 9
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 1 → Candidatus Marsarchaeota G1 archaeon BE_D	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1
Not Available	2
All Organisms → cellular organisms → Archaea → TACK group	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Thermal Spring Microbial Communities From Shoshone Spring, Yellowstone National Park
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Spring → Thermal Spring Microbial Communities From Shoshone Spring, Yellowstone National Park

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → hot spring → spring water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Seven Mile Hole Yellowstone National Park
• Coordinates
  • Lat. (^o): 44.75491405
  • Long. (^o): -110.41586031
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006070	Metagenome / Metatranscriptome	382	N
F011233	Metagenome / Metatranscriptome	293	N
F011451	Metagenome / Metatranscriptome	291	Y
F018439	Metagenome / Metatranscriptome	235	Y
F020075	Metagenome / Metatranscriptome	226	Y
F027904	Metagenome / Metatranscriptome	193	N
F028757	Metagenome	190	Y
F095752	Metagenome / Metatranscriptome	105	N
F100775	Metagenome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
SMH020_1000130	All Organisms → cellular organisms → Bacteria	25217
SMH020_1000575	All Organisms → cellular organisms → Bacteria	9407
SMH020_1001510	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 1 → Candidatus Marsarchaeota G1 archaeon BE_D	4335
SMH020_1003569	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	2249
SMH020_1005518	Not Available	1592
SMH020_1005748	Not Available	1527
SMH020_1010733	All Organisms → cellular organisms → Archaea → TACK group	871

Sequences

Scaffold ID	Protein ID	Family	Sequence
SMH020_1000130	SMH020_100013010	F018439	MARYTVRISTRSCCGRHRWPLIDIVETLANSGFEHLLLEEVTFAGACIPLALPLEIGLPGEKVQALVDAILDRLSQALGGNAFCFTGNLVVTASGAAEEVRAQEAHARIENKGLRARLEPTRFPAGITAL*
SMH020_1000130	SMH020_10001309	F020075	MKQYQFEIRFRLAAELKQSYSYIEMIHSLGNSGLQDIVLERGGFLNYKDTPLDLRLPTIMWPEAAESIGHELIRRLGEALGWDPRHFSGTLVLRGRGQANEEAAQRARQMLTGQGFMVFLEPLPAS*
SMH020_1000575	SMH020_10005751	F028757	QLLTAENLLSAVAIAADEVESWRHGDVLHSGMNGANPELQLPLPPPPQDVAHLTVHIRLKPPLPTAPLKESSGPTIPLTKWQDFESRWNAILGLEATIDGLRQRMESLRTQMEAESRKLLTADEKVHALNADVAQWEKAKSRVYYALPKVREFIHRATWAMGLPERKKLEEIFKNYIQLQLPFPEIDKVPEQLEHLLKDRQVLSAHGVAVCQECSTILADIQGAYRALQSNAAAKARDKMSAARKKGKFF*
SMH020_1001510	SMH020_10015109	F095752	MVSVPALLELDPYLRILLETAHQDGWDARPLYESLILDEIDYFTFRRVFLEYLSQGFQEIALSVFAKIEEVMLRYAGASIPQ*
SMH020_1003569	SMH020_10035692	F100775	MGRNFTVQELADFLFDRLIVDGPSCPDTEWLRQACQDAAADLLEEAEVVYKQEPVLDGGA
SMH020_1005518	SMH020_10055182	F027904	MKKYEPPEYDLFNLNNGSTLVGTTPASLLYEGQPTAAVIAPPDLTMRVKQVIIQNATASLITVQLQAVTTITGAPTPVAKTPPIPVPASSAVTLDEEEWSISVKPGYSLAAVSSAANSANVFVKAYFVKGTGSPI*
SMH020_1005748	SMH020_10057481	F011233	FLPFVKGWRYHVPQLQTQLLSGIPVSFTGTYTVLNGEFPGYFVAAAIGTTDPNFIARGSADGLTIIEVTVGELRDARVYRNQMGEPNILSYGSYIRGFPLPVYALSLSGDGLPFYQSIKIEVVPRNQPALITGFAANIIEIYDVNLFKQSTKQFFESVTPSSSTAQLTASPSAPPSFVANEVVSTRLPVKVT*
SMH020_1005748	SMH020_10057482	F006070	VTLYPYLVVDLPITDANTHTYRTNPLNPLTPTQPGISLVRLGESVPSVRAFNIYVYNYANASLSVQVIANENAKNYQYGYLLDGLDYQSETGYPDFNVGSPVTVPAGSLSTPSVQAVQSDFYTSAAERYLSVALTYSTAPSAGFVRAHIDLFYQGF*
SMH020_1010733	SMH020_10107331	F011451	TMPIEIISVTFANNSTAKEWAVVSDLGGKAEVNQFCSSYGGPFCIYPWYTLGSSGFHYGVDYGDTIKDFGKANQFAQEPLCGGPFGPNTTYCDTIIIK*