Scaffold SMH020_1005518

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold SMH020_1005518

Scaffold SMH020_1005518

Overview

Basic Information
Taxon OID	3300001109 Open in IMG/M
Scaffold ID	SMH020_1005518 Open in IMG/M
Source Dataset Name	04YSMH020
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1592
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Spring → Thermal Spring Microbial Communities From Shoshone Spring, Yellowstone National Park

Source Dataset Sampling Location
Location Name	Seven Mile Hole Yellowstone National Park
Coordinates	Lat. (^o)	44.75491405	Long. (^o)	-110.41586031	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027904	Metagenome / Metatranscriptome	193	N

Sequences

Protein ID	Family	RBS	Sequence
SMH020_10055182	F027904	GGTGG	MKKYEPPEYDLFNLNNGSTLVGTTPASLLYEGQPTAAVIAPPDLTMRVKQVIIQNATASLITVQLQAVTTITGAPTPVAKTPPIPVPASSAVTLDEEEWSISVKPGYSLAAVSSAANSANVFVKAYFVKGTGSPI*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.