Scaffold SMH020_1000575

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold SMH020_1000575

Scaffold SMH020_1000575

Overview

Basic Information
Taxon OID	3300001109 Open in IMG/M
Scaffold ID	SMH020_1000575 Open in IMG/M
Source Dataset Name	04YSMH020
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	9407
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Spring → Thermal Spring Microbial Communities From Shoshone Spring, Yellowstone National Park

Source Dataset Sampling Location
Location Name	Seven Mile Hole Yellowstone National Park
Coordinates	Lat. (^o)	44.75491405	Long. (^o)	-110.41586031	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F028757	Metagenome	190	Y

Sequences

Protein ID	Family	RBS	Sequence
SMH020_10005751	F028757	N/A	QLLTAENLLSAVAIAADEVESWRHGDVLHSGMNGANPELQLPLPPPPQDVAHLTVHIRLKPPLPTAPLKESSGPTIPLTKWQDFESRWNAILGLEATIDGLRQRMESLRTQMEAESRKLLTADEKVHALNADVAQWEKAKSRVYYALPKVREFIHRATWAMGLPERKKLEEIFKNYIQLQLPFPEIDKVPEQLEHLLKDRQVLSAHGVAVCQECSTILADIQGAYRALQSNAAAKARDKMSAARKKGKFF*

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