Scaffold SMH020_1000130

Overview

Basic Information

• Taxon OID: 3300001109
• Scaffold ID: SMH020_1000130
• Source Dataset Name: 04YSMH020
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25217
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (96.30%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Spring → Thermal Spring Microbial Communities From Shoshone Spring, Yellowstone National Park

Source Dataset Sampling Location

• Location Name: Seven Mile Hole Yellowstone National Park
• Coordinates
  • Lat. (^o): 44.75491405
  • Long. (^o): -110.41586031

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018439	Metagenome / Metatranscriptome	235	Y
F020075	Metagenome / Metatranscriptome	226	Y

Sequences

Protein ID	Family	RBS	Sequence
SMH020_100013010	F018439	AGGAGG	MARYTVRISTRSCCGRHRWPLIDIVETLANSGFEHLLLEEVTFAGACIPLALPLEIGLPGEKVQALVDAILDRLSQALGGNAFCFTGNLVVTASGAAEEVRAQEAHARIENKGLRARLEPTRFPAGITAL*
SMH020_10001309	F020075	N/A	MKQYQFEIRFRLAAELKQSYSYIEMIHSLGNSGLQDIVLERGGFLNYKDTPLDLRLPTIMWPEAAESIGHELIRRLGEALGWDPRHFSGTLVLRGRGQANEEAAQRARQMLTGQGFMVFLEPLPAS*