Scaffold JGI12662J13196_1000240

Overview

Basic Information

• Taxon OID: 3300001081
• Scaffold ID: JGI12662J13196_1000240
• Source Dataset Name: Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2622
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Algoma, Ontario, Canada
• Coordinates
  • Lat. (^o): 46.42
  • Long. (^o): -83.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F073976	Metagenome / Metatranscriptome	120	Y
F099739	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12662J13196_10002403	F099739	AGG	MRESLERRKPPIQGDLAPQVSAMIETRPNLHRSWYDYNWDWALISLLALVLLAGVVLWIYAGHPQTAAIPDDATAGQSTRPSLSVSPN*
JGI12662J13196_10002409	F073976	AGG	MTMXTGYVLGDIVTKAAYFSLAAAAFIFVAMTLLPGLHP*