Metagenome / Metatranscriptome Family F099739

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F099739
Family Type	Metagenome / Metatranscriptome
Number of Sequences	103
Average Sequence Length	70 residues
Representative Sequence	MIETRPNLHRSWYDYNWDWALISLLALVLLAGIVVLWTYADHPQTAAIPDDATTGQSTRPSVPTIPN
Number of Associated Samples	73
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	78.64 %
% of genes near scaffold ends (potentially truncated)	27.18 %
% of genes from short scaffolds (< 2000 bps)	87.38 %
Associated GOLD sequencing projects	67
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.39

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (52.427 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil (28.155 % of family members)
Environment Ontology (ENVO)	Unclassified (44.660 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (73.786 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 40.00% β-sheet: 0.00% Coil/Unstructured: 60.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.39
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.39
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF04392	ABC_sub_bind	1.94
PF03992	ABM	1.94
PF03401	TctC	0.97
PF12787	EcsC	0.97
PF13458	Peripla_BP_6	0.97
PF00982	Glyco_transf_20	0.97
PF12071	DUF3551	0.97
PF08352	oligo_HPY	0.97
PF04542	Sigma70_r2	0.97
PF13646	HEAT_2	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	1.94
COG0380	Trehalose-6-phosphate synthase, GT20 family	Carbohydrate transport and metabolism [G]	0.97
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.97
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.97
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.97
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.97
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.97

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	52.43 %
Unclassified	root	N/A	47.57 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	52.43 %
Unclassified	root	N/A	47.57 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	52.43 %
Unclassified	root	N/A	47.57 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.57 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	44.66 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.97 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.57 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	43.69 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.97 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.57 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	34.95 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	2.91 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.97 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.57 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	16.50 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	6.80 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.91 %
Cytophagia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia	0.97 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.57 %
Afipia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	6.80 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	6.80 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3.88 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.91 %
Cytophagales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales	0.97 %
Nocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.57 %
unclassified Afipia	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → unclassified Afipia	6.80 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	5.83 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.91 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.97 %
Catalimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Catalimonadaceae	0.97 %
Nocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.57 %
Afipia sp. Root123D2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → unclassified Afipia → Afipia sp. Root123D2	6.80 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	5.83 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.91 %
Bradyrhizobium sp. 160	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 160	0.97 %
Catalinimonas	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Catalimonadaceae → Catalinimonas	0.97 %
Nocardia testacea	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia testacea	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.57 %
Afipia sp. Root123D2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → unclassified Afipia → Afipia sp. Root123D2	6.80 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	5.83 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.91 %
Catalinimonas alkaloidigena	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Catalimonadaceae → Catalinimonas → Catalinimonas alkaloidigena	0.97 %
Bradyrhizobium sp. 160	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 160	0.97 %
Nocardia testacea	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia testacea	0.97 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001081\|JGI12662J13196_1000240	All Organisms → cellular organisms → Bacteria	2622	Open in IMG/M
3300001545\|JGI12630J15595_10053081	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	808	Open in IMG/M
3300001545\|JGI12630J15595_10080282	Not Available	641	Open in IMG/M
3300001661\|JGI12053J15887_10157279	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1189	Open in IMG/M
3300002245\|JGIcombinedJ26739_100351122	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 160	1356	Open in IMG/M
3300002245\|JGIcombinedJ26739_100642574	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → unclassified Afipia → Afipia sp. Root123D2	939	Open in IMG/M
3300002245\|JGIcombinedJ26739_100780526	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	835	Open in IMG/M
3300002245\|JGIcombinedJ26739_100928571	Not Available	753	Open in IMG/M
3300002245\|JGIcombinedJ26739_101881188	Not Available	500	Open in IMG/M
3300003505\|JGIcombinedJ51221_10039064	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → unclassified Afipia → Afipia sp. Root123D2	1762	Open in IMG/M
3300003505\|JGIcombinedJ51221_10227158	Not Available	758	Open in IMG/M
3300004091\|Ga0062387_101312542	Not Available	572	Open in IMG/M
3300004152\|Ga0062386_100382620	Not Available	1131	Open in IMG/M
3300004152\|Ga0062386_100407245	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1096	Open in IMG/M
3300004152\|Ga0062386_100679026	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → unclassified Afipia → Afipia sp. Root123D2	845	Open in IMG/M
3300004152\|Ga0062386_100794274	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	780	Open in IMG/M
3300004152\|Ga0062386_100868368	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia testacea	745	Open in IMG/M
3300005168\|Ga0066809_10224673	Not Available	516	Open in IMG/M
3300005434\|Ga0070709_11023501	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	658	Open in IMG/M
3300005602\|Ga0070762_10221732	All Organisms → cellular organisms → Bacteria	1165	Open in IMG/M
3300005921\|Ga0070766_10585873	Not Available	748	Open in IMG/M
3300006046\|Ga0066652_100982833	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	802	Open in IMG/M
3300006046\|Ga0066652_102038885	Not Available	510	Open in IMG/M
3300006057\|Ga0075026_101099144	Not Available	500	Open in IMG/M
3300006173\|Ga0070716_100809073	Not Available	726	Open in IMG/M
3300006176\|Ga0070765_101526125	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	629	Open in IMG/M
3300006176\|Ga0070765_101861902	Not Available	564	Open in IMG/M
3300006176\|Ga0070765_101873491	Not Available	562	Open in IMG/M
3300006354\|Ga0075021_10459017	Not Available	804	Open in IMG/M
3300009088\|Ga0099830_10167109	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1703	Open in IMG/M
3300009100\|Ga0075418_10325093	Not Available	1641	Open in IMG/M
3300010147\|Ga0126319_1342074	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	705	Open in IMG/M
3300010154\|Ga0127503_10522167	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	990	Open in IMG/M
3300010339\|Ga0074046_10047812	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → unclassified Afipia → Afipia sp. Root123D2	2852	Open in IMG/M
3300010339\|Ga0074046_10116375	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1718	Open in IMG/M
3300010339\|Ga0074046_10546719	Not Available	688	Open in IMG/M
3300010343\|Ga0074044_10878847	Not Available	586	Open in IMG/M
3300010401\|Ga0134121_13098989	Not Available	512	Open in IMG/M
3300010937\|Ga0137776_1351027	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	874	Open in IMG/M
3300010937\|Ga0137776_1389239	Not Available	765	Open in IMG/M
3300011120\|Ga0150983_13538203	Not Available	818	Open in IMG/M
3300011269\|Ga0137392_11125307	Not Available	643	Open in IMG/M
3300011271\|Ga0137393_10218052	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1614	Open in IMG/M
3300012096\|Ga0137389_11105853	Not Available	679	Open in IMG/M
3300012189\|Ga0137388_10279607	All Organisms → cellular organisms → Bacteria	1526	Open in IMG/M
3300012189\|Ga0137388_10332968	All Organisms → cellular organisms → Bacteria	1397	Open in IMG/M
3300012201\|Ga0137365_11032969	Not Available	595	Open in IMG/M
3300012285\|Ga0137370_11034690	Not Available	505	Open in IMG/M
3300012582\|Ga0137358_10984949	Not Available	547	Open in IMG/M
3300012930\|Ga0137407_11284433	Not Available	695	Open in IMG/M
3300012985\|Ga0164308_10168876	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1637	Open in IMG/M
3300012987\|Ga0164307_10329330	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1100	Open in IMG/M
3300015371\|Ga0132258_11543633	Not Available	1677	Open in IMG/M
3300015371\|Ga0132258_11913593	Not Available	1493	Open in IMG/M
3300018468\|Ga0066662_11474251	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	707	Open in IMG/M
3300019887\|Ga0193729_1027354	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2430	Open in IMG/M
3300019890\|Ga0193728_1044543	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	2173	Open in IMG/M
3300020579\|Ga0210407_10063727	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2762	Open in IMG/M
3300020579\|Ga0210407_10445991	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1012	Open in IMG/M
3300021088\|Ga0210404_10655548	All Organisms → cellular organisms → Bacteria	598	Open in IMG/M
3300021168\|Ga0210406_10269101	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → unclassified Afipia → Afipia sp. Root123D2	1393	Open in IMG/M
3300021170\|Ga0210400_10575909	Not Available	929	Open in IMG/M
3300021180\|Ga0210396_10824470	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	795	Open in IMG/M
3300021401\|Ga0210393_10142381	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → unclassified Afipia → Afipia sp. Root123D2	1925	Open in IMG/M
3300021420\|Ga0210394_11512900	Not Available	567	Open in IMG/M
3300021475\|Ga0210392_10289803	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → unclassified Afipia → Afipia sp. Root123D2	1170	Open in IMG/M
3300021478\|Ga0210402_10102581	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2571	Open in IMG/M
3300021478\|Ga0210402_10871885	All Organisms → cellular organisms → Bacteria	826	Open in IMG/M
3300021479\|Ga0210410_10403761	Not Available	1224	Open in IMG/M
3300021559\|Ga0210409_11375962	Not Available	582	Open in IMG/M
3300025898\|Ga0207692_10615571	Not Available	699	Open in IMG/M
3300027310\|Ga0207983_1049931	Not Available	546	Open in IMG/M
3300027521\|Ga0209524_1007936	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2074	Open in IMG/M
3300027521\|Ga0209524_1120643	Not Available	547	Open in IMG/M
3300027565\|Ga0209219_1059459	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	953	Open in IMG/M
3300027583\|Ga0209527_1001555	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4660	Open in IMG/M
3300027603\|Ga0209331_1019141	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	1773	Open in IMG/M
3300027605\|Ga0209329_1066404	Not Available	777	Open in IMG/M
3300027610\|Ga0209528_1007250	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2373	Open in IMG/M
3300027610\|Ga0209528_1010592	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Catalimonadaceae → Catalinimonas → Catalinimonas alkaloidigena	1994	Open in IMG/M
3300027651\|Ga0209217_1009236	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3245	Open in IMG/M
3300027651\|Ga0209217_1027338	Not Available	1798	Open in IMG/M
3300027727\|Ga0209328_10018733	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	2107	Open in IMG/M
3300027727\|Ga0209328_10194203	Not Available	613	Open in IMG/M
3300027738\|Ga0208989_10021635	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2213	Open in IMG/M
3300027812\|Ga0209656_10115618	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1388	Open in IMG/M
3300027812\|Ga0209656_10265421	Not Available	806	Open in IMG/M
3300027812\|Ga0209656_10329344	Not Available	699	Open in IMG/M
3300027824\|Ga0209040_10033849	All Organisms → cellular organisms → Bacteria → Proteobacteria	3203	Open in IMG/M
3300027824\|Ga0209040_10340727	Not Available	715	Open in IMG/M
3300027824\|Ga0209040_10433051	Not Available	603	Open in IMG/M
3300027855\|Ga0209693_10120605	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1298	Open in IMG/M
3300027894\|Ga0209068_10825218	Not Available	547	Open in IMG/M
3300027908\|Ga0209006_10929270	Not Available	697	Open in IMG/M
3300028047\|Ga0209526_10346551	Not Available	996	Open in IMG/M
3300028047\|Ga0209526_10360277	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	972	Open in IMG/M
3300028047\|Ga0209526_10563187	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	735	Open in IMG/M
3300028906\|Ga0308309_11690204	Not Available	537	Open in IMG/M
3300029636\|Ga0222749_10115352	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1277	Open in IMG/M
3300031231\|Ga0170824_120505919	Not Available	541	Open in IMG/M
3300031446\|Ga0170820_17370785	Not Available	857	Open in IMG/M
3300031469\|Ga0170819_16854680	Not Available	586	Open in IMG/M
3300031474\|Ga0170818_111880029	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	712	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.09%
Host-Associated	Host-Associated	2.91%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	78.64%
Aquatic	Environmental → Aquatic	18.45%
Plants	Host-Associated → Plants	2.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	78.64%
Freshwater	Environmental → Aquatic → Freshwater	13.59%
Sediment	Environmental → Aquatic → Sediment	2.91%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.94%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.94%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.97%

Habitat	Taxonomy	Distribution
Loam	Environmental → Terrestrial → Soil → Loam	37.86%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	36.89%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	11.65%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.88%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.91%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	1.94%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	1.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	34.95%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	17.48%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.50%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	11.65%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.88%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.91%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.91%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.91%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	1.94%
Sediment	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment	1.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	28.16%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	13.59%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	11.65%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	9.71%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	6.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.88%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.88%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	3.88%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.91%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.91%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	1.94%
Sediment	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment	1.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.94%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.97%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.97%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.97%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001081	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3	Environmental	Open in IMG/M
3300001545	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005168	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300010147	Soil microbial communities from California, USA to study soil gas exchange rates - BB-CA-RED metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010937	Fumarole sediment microbial communities, Furnas, Sao Miguel, Azores. Combined Assembly of Gp0156138, Gp0156139	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300019890	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300027310	Soil and rhizosphere microbial communities from Laval, Canada - mgHMB (SPAdes)	Environmental	Open in IMG/M
3300027521	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027565	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M1 (SPAdes)	Environmental	Open in IMG/M
3300027583	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027603	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027605	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027610	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027651	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027727	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027738	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12662J13196_10002403	3300001081	Forest Soil	MRESLERRKPPIQGDLAPQVSAMIETRPNLHRSWYDYNWDWALISLLALVLLAGVVLWIYAGHPQTAAIPDDATAGQSTRPSLSVSPN*
JGI12630J15595_100530813	3300001545	Forest Soil	SWYDYNWDWALILLLAFVLLAGIVVLWTYADHPQTTAIPDDATMGQSTRTSLPVFAN*
JGI12630J15595_100802822	3300001545	Forest Soil	MFETRPNLHRSWDNYNWDWALILLFALVVLVGTILWIYPDHPQTAVILDDATTGRSIQPSLPTFV
JGI12053J15887_101572791	3300001661	Forest Soil	LTCLFHRRARCVNARALERRKPPIQEDLAPQVSAMIETRPNLHRSWYDYNWDWALILLLAFVLLAGIVVLWTYADHPQTAAIPDDATTGQSTRPSVPTIPN*
JGIcombinedJ26739_1003511222	3300002245	Forest Soil	MIETRPNLHRSWYDYNWDWALISLLALVLLAGIVVLWTYADHPQTAAIPDDVTTGQSNRPSVPTIPN*
JGIcombinedJ26739_1006425742	3300002245	Forest Soil	MFETRPNLHRSWDNYNWDWALILLFGLVVLVGTILWTYPDHPKTAVIPDDATTGRSIQPSLPTFADRYNGQSD*
JGIcombinedJ26739_1007805262	3300002245	Forest Soil	MFETRPNLHRSWDNYNWDWALILLFALVVLVGTILWIYPDHPQTAVILDDATTGRSIQPSLPTFVDRYNGQSD*
JGIcombinedJ26739_1009285712	3300002245	Forest Soil	MFETKSKLRRSWYDYNWDWALILLLAFVLLAGIVVLWTYADHPQTTAIPDDATXGQSTRTSLPVFAN*
JGIcombinedJ26739_1018811882	3300002245	Forest Soil	MIETKSKLRRSWYDYNWDWALISLFALVILAGIVLWTHGDHPGTPAIPDDATTGHSTRPSLPIFPN*
JGIcombinedJ51221_100390644	3300003505	Forest Soil	LAPQVSAMIETRPNLHRSWYDYNWDWALISLLALVLLAGIVVLWTYADHPQTAAIPDDATTGQSTRPSVPTIPN*
JGIcombinedJ51221_102271582	3300003505	Forest Soil	MIETRPNLHRSWYDYNWDWALILLLAFVLLAGIVVLWTYADHPQTAAIPDDATTGQSTRPSVPTIPN*
Ga0062387_1013125421	3300004091	Bog Forest Soil	MIETRPNRSWYDDNWDWALISLFALVLLAGVVVWTTYPDHAQTGPIPDDATTGQSTR*
Ga0062386_1003826201	3300004152	Bog Forest Soil	VKKALIQGTWLLQVSAMIETKSNLRRSWYDYNWDWALISLLALVLLARIVLLTYADHQQTAAIPDATTGQSTRPSLPIFPN*
Ga0062386_1004072452	3300004152	Bog Forest Soil	MTESKPTESKPTLYRSWYDYNWDWLLISLFTLVILAGIVLWAYSNYPQTAAIPDDATTGQSTQRSFPNFPE*
Ga0062386_1006790262	3300004152	Bog Forest Soil	MLKTKSNLRRSWYDYNWDWALISLFALVLLVGIVLWTYADHPRTAATPDDATTGQSTR*
Ga0062386_1007942743	3300004152	Bog Forest Soil	KVHQSESFRAKKAPIQGDLAPQVSPMIKTRPDLRRSWYDYNWDWALISLLALVLLAGIVLWIYADHPQTAAIPDDATTGQNTRPSRPT*
Ga0062386_1008683681	3300004152	Bog Forest Soil	MIETKPNFQRSWYDYSWDWVLNSLFALVLLAGIVLWTYKDDPQTVAVPDDATTGQSTRPDLPNFPN*
Ga0066809_102246731	3300005168	Soil	MIETGPNLHRSWYDYNWDWALISLLALVLLAGIVLWIYADSPQTAAIPDDATAGQNTRPSLPVFPN*
Ga0070709_110235012	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MIETRPNLHHSWYDYNWDWALILLLAFVLLAGIVVLWTYADHPQTAAIPDDATTGQSTRPSVPTIPN*
Ga0070762_102217323	3300005602	Soil	VSAKIATKSNLRRSWYDYNWDWALILLLAFVLLAGIVVLWTYADHPQTAAIPDDATTGQSTRPSVPTIPN*
Ga0070766_105858731	3300005921	Soil	QVSAMIETRPNLHRSWYDYNWDWALISLLALVLLAGIVVLWTYADHPQTAAIPDDATTGQSTRPSVPTIPN*
Ga0066652_1009828331	3300006046	Soil	LKPRSWYDYNWDWALISLLALVLLAGIVVWTNVHQSPTAVTLDGATIGQSTRPDLPI
Ga0066652_1020388851	3300006046	Soil	MIESKPNLRRSWYDYNWDWALILLLAFVLLAGIVLWTYADHPQTAAIPDDATTGQSTRS
Ga0075026_1010991441	3300006057	Watersheds	MIETRPNLHRSWYDYNWDWALISLLALVLLAGIVVLWTYADHPQTAAIPDDATTGQSTRPSVPTIPN*
Ga0070716_1008090731	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MIETRPNLHHSWYDYNWDWALILLLAFVLLAGIVVLWTYADHSQTAAIPDDATTGQSTRPSVPTIPN*
Ga0070765_1015261251	3300006176	Soil	MIETRPNRSWYDDNWDWALISLFALVLLAGVVVWTTYPDHAQTAAIPDDATTG
Ga0070765_1018619022	3300006176	Soil	MLKTKSNLRRRWYDYNWDWALISLLALVLLAGIVLWTYADHAQTAAIPDAAAGQSTRPSLPIFPN*
Ga0070765_1018734912	3300006176	Soil	MSPNFHRSWYDHNWDWALILLFALVLLAGIVLWTTYADRPQAAAIPDDATTGQSTRPGLPTYCSANAFMCE*
Ga0075021_104590171	3300006354	Watersheds	MIETRPNLHRSWYDYNWDWALISLLALVLLAGIVVLWTYADHPQTAAIPDDATTGQSNRPSVPTIPN*
Ga0099830_101671094	3300009088	Vadose Zone Soil	MIDTKSNFQRSWYDYSWDWALVSLFALVLLAGIVLWTYKDYPQTAAIPDDATTGQSTRPDLPN*
Ga0075418_103250932	3300009100	Populus Rhizosphere	MGTKANLRRSWYDYNWDWALISLLALVLLVGIVLWITYTDRSQTAALPDDSTTGQNHS*
Ga0126319_13420741	3300010147	Soil	ESAMTDPRHFEARPMLRRSLYDYSWDWAMASLFVLVILAGIAVWTYADHPQTAGMLDDATTGQSIRPSAPHRN*
Ga0127503_105221672	3300010154	Soil	MIETRPNRSWYDDNWDWALIALFALVLLAGVVVWTAYPDHAQTAAISDDATTGQNTR*
Ga0074046_100478123	3300010339	Bog Forest Soil	MIETKSNLRRSWYDYNWDWALISLLALVLLARIVLLTYADHQQTAAIPDATTGQSTRPSLPIFPN*
Ga0074046_101163754	3300010339	Bog Forest Soil	IETRPNRSWYDDNWDWALILLFALVLLAGVVVWTTFPDHPQTAAMLDDATTGQNTR*
Ga0074046_105467191	3300010339	Bog Forest Soil	MIETRPNRSWYDDNWDWALISLFALVLLAGVVVWTTYPDHAQTAAIPDDATTGQSTR*
Ga0074044_108788471	3300010343	Bog Forest Soil	MIETRPNRSWYDDNWDWALISLFALVLLAGIVVWTTYPDHAQTAAIPDDATTGQNTR*
Ga0134121_130989891	3300010401	Terrestrial Soil	MIETRPNRSWYDNNWDWALIALFALVLLAGVVVWTTYPDHAQTAAISDDATTGRSIRPNVPTFPN*
Ga0137776_13510272	3300010937	Sediment	MIETRPNRSWYDENWDWALISLFALVLLAGVVVWTTYPDHPQTAAILDNATTGQNTRPSVPIFPN*
Ga0137776_13892393	3300010937	Sediment	AGAPSAMIETKPNLRRGWYEYNWDWAIISLLALVLLVGIVVWINVHQSQTAAILDDATTGQSTR*
Ga0150983_135382031	3300011120	Forest Soil	DLAPQVSAMIETRPNLHRSWYDYNWDWALISLLALVLLAGIVLWIYADHSQTAAIPDDATTGQSTRPRVPTIPN*
Ga0137392_111253071	3300011269	Vadose Zone Soil	MIDTKSNFQRSWYDYSWDWALVSLFALVLLAGIVLWTYKDYPQTAAMPDDATTGQSTRPDLPN*
Ga0137393_102180522	3300011271	Vadose Zone Soil	MIETRLNRSWYDYNWDWALISLLALVLLAGIVFWTNVRQSQTAVILDDATTGQSIRPDLPNSPN*
Ga0137389_111058531	3300012096	Vadose Zone Soil	MIETRANLHRNWYDYNWDWALIALFALVLLAGIVIWTSPDHPQTAAMPDDATTGQNIRPNLPAFPN*
Ga0137388_102796071	3300012189	Vadose Zone Soil	HRSWYDYNWDWALISLFALVLLAGIVLWTYKDHPQTAAAIPDDATTGQSTRPSRSDSR*
Ga0137388_103329682	3300012189	Vadose Zone Soil	MIETMPNLHHRSWYDYNWDWALISLSALVLLAGVAVWTYAYQPQTAAIPDDATTGQGMQPSLPTFPPAL*
Ga0137365_110329691	3300012201	Vadose Zone Soil	MIETRPNLPPHWYDYSWDWALISLFALVLLAGIVWTYADRSQTASIPDDATTGQSTQPGLPNFPN*
Ga0137370_110346901	3300012285	Vadose Zone Soil	VSAMIETRPNLPPHWYDYSWDWALTSLFALVLLAGIVWTYADRSQTASIPDDATTGQSTRPSLPTFQN*
Ga0137358_109849491	3300012582	Vadose Zone Soil	RSWYDYSWDWALISLFALVLLAGIVLWTYKDHPQTAAISEDATTGQSTRPHLPNFPN*
Ga0137407_112844332	3300012930	Vadose Zone Soil	VSAVIETRPTRSWYDENWDWALISLFALVLLAGIVVWTTYPDHAQSAAILDDATTGQ
Ga0164308_101688761	3300012985	Soil	MIETRPNLHRSWYDYNWDWALILLLAFVLLAGIVVLWTYADHPQTAGIPDDATSGQSTRPSVPTIPN*
Ga0164307_103293302	3300012987	Soil	MIETRPNLHRSWYDYHWDWALILLLAFVLLAGIVVLWTYADHPQTAAIPDDATTGQSTRPSVPTIPN*
Ga0132258_115436332	3300015371	Arabidopsis Rhizosphere	MMETRPNRSWYDDNWDWALISLFALVLLAGVVVWTPYPNVPQAADDATTGQSTRPSVPTF
Ga0132258_119135932	3300015371	Arabidopsis Rhizosphere	MMETRPNCSWYDDNWDWALISLFALVLLAGVVVWTTYPDDPQTAAIPDNATTGQSTRPSVPTFPN*
Ga0066662_114742512	3300018468	Grasslands Soil	LAPQVSAMIETRPNLHRSWYDYNWDWALISLLALVLLAGIVVLWTYADHPQTAAIPDDATAGQNTRPSLPVFLNWICFSKQA
Ga0193729_10273545	3300019887	Soil	MRESLERRKPPIQGDLAPQVSAMIETRPNLHRSWYDYNWDWALISLLALVLLAGVVLWIYAGHPQTAAIPDDATAGQSTRPSLSVSPN
Ga0193728_10445432	3300019890	Soil	MRESLERRKPPIQGDLAPQVSAMIETRPNLHRSWYDYNWDWALISLLALVLLAGIVLWIYADHPQTAAIPDDATTGQNTRPSLPVFPN
Ga0210407_100637273	3300020579	Soil	VRQCESYRAKKTPIQGDLAPQVSAMIETRPNLHRSWYDYNWDWALISLLALVLLAGIVVLWTYADHPQTAAIPDDATTGQSTRPSVPTIPN
Ga0210407_104459912	3300020579	Soil	MIETRPNLHRSWYDYNWDWALILLLAFVLLAGIVVLWTYADHPQTAAIPDDATTGQSTRPSVPTIPN
Ga0210404_106555481	3300021088	Soil	SPTRKVRQCESFRAKKAPIQEDLAPQVSAMIETRPNLHRSWYDYNWDWALILLLAFVLLAGIVVLWTYADHPQTAAIPDDATTGQSTRPSVPTIPN
Ga0210406_102691014	3300021168	Soil	MIETRPNLHRSWYDYNWDWALISLLALVLLAGIVVLWTYADHPQTAAIPDDATTGQ
Ga0210400_105759091	3300021170	Soil	MIETRPNLQRSWYDYNWDWALISLLALVLLAGIVVLWTYADHPQTAAIPDDATTGQSTRPSVPTIPN
Ga0210396_108244702	3300021180	Soil	MRGQKPPIQEDLAPQVSAMIETRPNLHRSWYDYNWDWALISLLALVLLAGIVVLWTYADHPQTAAIPDDATTGQSTRPSVPTIPN
Ga0210393_101423814	3300021401	Soil	MIETRPNLHRSWYDYNWDWALISLLALVLLAGIVVLWTYADHPQTAAIPDDATTGQSTRPSVPTIPN
Ga0210394_115129001	3300021420	Soil	QKPPIQEDLAPQVSAMIETRPNLHRSWYDYNWDWALILLLAFVLLAGIVVLWTYADHPQTAAIPDDATTGQSTRPSVPTIPN
Ga0210392_102898031	3300021475	Soil	LAPQVSAMIETRPNLHRSWYDYNWDWALISLLALVLLAGIVVLWTYADHPQTAAIPDDATTGQSTRPSVPTIPN
Ga0210402_101025812	3300021478	Soil	MIETRPNLQRSWYDYNWDWALISLLALVLLAGIVLWIYADHPHTAAIPDHATTGQNTRPSLPVFPN
Ga0210402_108718851	3300021478	Soil	KKAPIQEDLAPQVSAMIETRPNLHRSWYDYNWDWALILLLAFVLLAGIVVLWTYADHPQTAAIPDDATTGQSTRPSVPTIPN
Ga0210410_104037612	3300021479	Soil	MRELQSEENFDSGKLGPPQVSPMIKTRPDLRRSWYDYNWDWALISLLALVLLAGIVLWIYADHPQTAAIPVDATTGQSTRPSVPTIPN
Ga0210409_113759621	3300021559	Soil	MSPNFHRSWYDHNWDWALILLFALVVLVGTILWTYPDHPQTTAIPDDATTGQSTRTSLPVFAN
Ga0207692_106155711	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MIETRPSLHHSWYDYNWDWALILLLAFVLLAGIVVLWTYADHPQTAAIPDDATTGQSTRPSVPTIPN
Ga0207983_10499311	3300027310	Soil	MRELQSEENSDSGKLGPPQVSAMIETRPNLHRSWYDYNWDWALISLLALVLLAGIVVLWTYADHPQTAAIPDDATTGQSTRPSVPTIPN
Ga0209524_10079362	3300027521	Forest Soil	MRESLERRKPPIQGDLAPQLSAMIETRPNLHRSWYDYNWDWALILLLAFVLLAGIVVLWTYADHPQTAAIPDDATTGQSTRPSVPTIPN
Ga0209524_11206431	3300027521	Forest Soil	MSPNFHRSWYDHNWDWALILLFALVLLAGIVLWTTYADRPQAAAIPDDATTGQSTRPGCTSSARRSGC
Ga0209219_10594592	3300027565	Forest Soil	MRELQSEENSDSGKLGPPQVSAMIETRPNLHRSWYDYNWDWALILLLAFVLLAGIVVLWTYADHPQTAAIPDDATTGQSTRPSVPTIPN
Ga0209527_10015552	3300027583	Forest Soil	MIETRPNLHRSWYDYNWDWALILLLAFVLLAGIVVLWTYADHPQTAAIPDDATAGQSTRPSLSVSPN
Ga0209331_10191414	3300027603	Forest Soil	MFETRPNLHRSWDNYNWDWALILLFALVVLVGTILWIYPDHPQTAVILDDATTGRSIQPSLPTFVDRYNGQSD
Ga0209329_10664041	3300027605	Forest Soil	HRSWYDYNWDWALILLLAFVLLAGIVVLWTYADHPQTAAIPDDATTGQSTRPSVPTIPN
Ga0209528_10072505	3300027610	Forest Soil	MRESLERRKPPIQGDLAPQVSAMIETRPNLHRSWYDYNWDWALILLLAFVLLAGIVVLWTYADHPQTAAIPDDATTGQSTRPSVPTIPN
Ga0209528_10105922	3300027610	Forest Soil	MSPNFHRSWYDHNWDWALILLFALVLLAGIVLWTTYADRPQAAAIPDDATTGRSIQPSLPTFADRYNGQSD
Ga0209217_10092366	3300027651	Forest Soil	MRESLERRKPPIQGDLAPQLSAMIETRPNLHRSWYDYDWDWALISLLALVLLAGIVLWIYAGHPQTAAIPDDATTGQSTRPGLPVFPN
Ga0209217_10273382	3300027651	Forest Soil	MSPNFHRSWYDHNWDWALILLFALVLLAGIVLWTTYADRPQAAAIPDDATTGQAKLPSS
Ga0209328_100187332	3300027727	Forest Soil	MFETRPNLHRSWDNYNWDWALILLFALVVLVGIILWIYPDHPQTAVILDDATTGRSIQPSLPTFVDRYNGQSD
Ga0209328_101942031	3300027727	Forest Soil	HRRARCVNARALEQKTPIQGDLAPQVSAMIETRPNLHRSWYDYNWDWALISLLALVLLAGIVVLWTYADHPQTAAIPDDATTGQSTRPSVPTIPN
Ga0208989_100216354	3300027738	Forest Soil	MRESLERRKPPIQGDLAPQLSAMIETRPNLHRSWYDYNWDWALILLLAFVLLAGIVVLWTYADHPQTAAIPDDATAGQSTRPSLSVSPN
Ga0209656_101156182	3300027812	Bog Forest Soil	MLKTKSNFRRSWYDYNWDWALISLFALLLLAGIVLWTYADHQQTAAILDATTGQGAGPSLPIFAN
Ga0209656_102654213	3300027812	Bog Forest Soil	MIETRPNRSWYDDNWDWALISLFALVLLAGVVVWTTYPDHAQTSAMPDDATIGQSTR
Ga0209656_103293442	3300027812	Bog Forest Soil	MLETKSNLRRSWYDYNWDWAIILVLALVLLAGVVLWTYGDHPQTAAISDDATTGQSTRPSLPILPN
Ga0209040_100338491	3300027824	Bog Forest Soil	MIETRPNRSWYDDNWDWALISLFALVLLAGVVVWTTYPDHAQTAAIPDDATTGQSTR
Ga0209040_103407271	3300027824	Bog Forest Soil	AMIETRPNRSWYDDNWDWALILLFALVLLAGVVVWTTFPDHPQTAAMLDDATTGQNTR
Ga0209040_104330511	3300027824	Bog Forest Soil	MIETKSNLRRSWYDYNWDWALISLLALVLLARIVLLTYADHQQTAAIPDATTGQSTRPSLPIFPN
Ga0209693_101206051	3300027855	Soil	MIETGPNLHRSWYDYNWDWALISLLALVLLAGIVVLWTYADHPQTAAIPDDATTGQSTRPSLPVFPN
Ga0209068_108252181	3300027894	Watersheds	LAPQVSAMIETRPNLHRSWYDYNWDWALISLFALVLLAGVVVWTTYPDHAQTAAIPDDATTGQNTRPSFPVFPN
Ga0209006_109292701	3300027908	Forest Soil	MRESLERRKPPIQGDLAPQVSAMIETRPNLHRSWYDYNWDWALISLLALVLLAGIVVLWTYADHPQTAAIPDDATTGQSTRPSVPTIPN
Ga0209526_103465514	3300028047	Forest Soil	YDYNWDWALILLLAFVLLAGIVVLWTYADHPQTAAIPDDATTGQSTRPSVPTIPN
Ga0209526_103602773	3300028047	Forest Soil	MIETRPNRSWYDDNWDWALISLFAFVLLAGIVVWITYPDHAQTAAIPDDATTGQSTR
Ga0209526_105631872	3300028047	Forest Soil	MFETKSKLRRSWYDYNWDWALILLLAFVLLAGIVVLWTYADHPQTTAIPDDATTGQSTRTSLPVFAN
Ga0308309_116902041	3300028906	Soil	MLKTKSNLRRRWYDYNWDWALISLLALVLLAGIVLWTYADHAQTAAIPDAAAGQSTRPSLPIFPN
Ga0222749_101153522	3300029636	Soil	VRQCESFRAKKAPIQEDLAPQVSAMIETRPNLHHSWYDYNWDWALILLLAFVLLAGIVVLWTYADHPQTAAIPDDATTGQSTRPSVPTIPN
Ga0170824_1205059191	3300031231	Forest Soil	MIETRPNLHRSWDNYNWDWALILLFALLLLVGTILWTYPDHPQTAVIPDDAMTGRSIQPSFPTFADRYNGQSD
Ga0170820_173707851	3300031446	Forest Soil	MIETRPNLHRSWYDYNWDWALISLLALVLLAGIIVLWTYADHPQTAAIPDDATTGQSTRPSVPTIPN
Ga0170819_168546801	3300031469	Forest Soil	MIETRPNLHRSWYDYNWDCALISLLALVLLAGIVLWIYADSPQTAAIPDDATAGQNTRPSVPTI
Ga0170818_1118800292	3300031474	Forest Soil	MIETRPNLHRSWYDYNWDWALISLLALVLLAGIVVLWTYADHPQTAAIPDDATTGQSTRPSLPVFPN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F099739

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences