NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold BBAY93_10114137

Scaffold BBAY93_10114137


Overview

Basic Information
Taxon OID3300000973 Open in IMG/M
Scaffold IDBBAY93_10114137 Open in IMG/M
Source Dataset NameMacroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY93
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)685
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Green Algae → Ectosymbionts → Unclassified → Macroalgal Surface → Macroalgal Surface Microbial Communities

Source Dataset Sampling Location
Location NameBotany Bay, Sydney, NSW, Australia
CoordinatesLat. (o)-33.966629Long. (o)151.166614Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013088Metagenome / Metatranscriptome274Y
F018155Metagenome / Metatranscriptome236Y
F067646Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
BBAY93_101141371F013088N/AELHKDIKVFAITNNMNIESATQLLLKLGMVSYKENNHGSK*
BBAY93_101141372F018155AGGAGMGQNSAAVEKRRKELEQEKLDKQIKTYYFQKGAGKHYREITYMSGKVVRTEFNA*
BBAY93_101141373F067646AGGAMLEWILYFIAGIFGLVFIGIILSVLAFIYVIRELD*

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