Scaffold JGI12531J12852_10037833

Overview

Basic Information

• Taxon OID: 3300000931
• Scaffold ID: JGI12531J12852_10037833
• Source Dataset Name: Aerobic enrichment media microbial communities from Bioluminiscent Bay, La Parguera, Puerto Rico - Tt and P1 (2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1682
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Lab Enrichment → Defined Media → Aerobic Media → Unclassified → Aerobic Enrichment Media → Environmental Microbial Communities From Fremont, Ca And La Paraguera, Puerto Rico

Source Dataset Sampling Location

• Location Name: Bioluminescent Bay, La Paraguera, Puerto Rico
• Coordinates
  • Lat. (^o): 17.967317
  • Long. (^o): -67.018833

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033243	Metagenome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12531J12852_100378333	F033243	AGGA	MKRKHHDTLGLLKQGPIDLVGHGAEPVLAAGYSTLELERAGLTVEKARELGIPVDAGRCSGVGANVMQLRALLTS*