Scaffold NpDRAFT_10120337

Overview

Basic Information

• Taxon OID: 3300000929
• Scaffold ID: NpDRAFT_10120337
• Source Dataset Name: Marine plume microbial communities from the Columbia River - 15 PSU
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Maryland
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1542
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients

Source Dataset Sampling Location

• Location Name: Columbia River plume, coastal ocean
• Coordinates
  • Lat. (^o): 46.239
  • Long. (^o): -124.161
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004162	Metagenome	450	Y
F017556	Metagenome / Metatranscriptome	240	Y
F069990	Metagenome	123	Y
F105514	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
NpDRAFT_101203371	F004162	N/A	MGKSQKVATLLGERQKIEKEIEELQRSCQHPTKSIKNVRERLDSTSMVTRYVCGECSLIIGIPNNDELQNFLKQ*
NpDRAFT_101203373	F105514	N/A	MESMNKKRKFKLGQGKTPQQYTDSTRFAWYGVVGMIILLILMHSC*
NpDRAFT_101203374	F017556	N/A	MKNQIKEPKFKEGQVVAFPSTCTVGNKARNGGTITAVEKMYELKEENKTYYSNGICRGDLTTQHSLSNGEFKGYSYKCKTIQPNGFSAEIVMVEEFKLKVSTEEKVINSYKIYA*
NpDRAFT_101203375	F069990	N/A	MKKLLYLVALGAMFTSCEKTEEFEILTNYQFEMTGRTSQDINGYYHVSINSSEDQQSLHRFGAYVTNVDKFNLPTKVIWRCDAFWYTPDTLGHTYIEI