Scaffold NpDRAFT_10049949

Overview

Basic Information

• Taxon OID: 3300000929
• Scaffold ID: NpDRAFT_10049949
• Source Dataset Name: Marine plume microbial communities from the Columbia River - 15 PSU
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Maryland
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2633
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients

Source Dataset Sampling Location

• Location Name: Columbia River plume, coastal ocean
• Coordinates
  • Lat. (^o): 46.239
  • Long. (^o): -124.161
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001176	Metagenome / Metatranscriptome	756	Y
F006846	Metagenome / Metatranscriptome	363	Y
F031101	Metagenome	183	Y

Sequences

Protein ID	Family	RBS	Sequence
NpDRAFT_1004994911	F001176	N/A	QDNSLMSENGTGMATPPNNQPSGAVTSQEVERKKPTQGKFKSGFSGPRPPTKVDTNKHGIRRETVLGQKKSGRPKKV*
NpDRAFT_100499493	F031101	GGCGG	MNDLFWYSRQLREAVSTTGMENGWDNDKCKEVFDELMDKYLVSKDLK*
NpDRAFT_100499499	F006846	GGA	MLVNFVEKYLMRPKRLRDAIEAVVHDNDELLRILKQHEEEGPTNLTWAEGDRWYGWTYNSNAKRYYFDDIGNESLMGLWEDQWAREEAESK*