Scaffold FwDRAFT_10015798

Overview

Basic Information

• Taxon OID: 3300000882
• Scaffold ID: FwDRAFT_10015798
• Source Dataset Name: Freshwater microbial communities from the Columbia River
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Maryland
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5382
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients

Source Dataset Sampling Location

• Location Name: Columbia River freshwater tidal region
• Coordinates
  • Lat. (^o): 46.18
  • Long. (^o): -123.18
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F000671	Metagenome / Metatranscriptome	945	Y
F014140	Metagenome / Metatranscriptome	265	Y
F042904	Metagenome / Metatranscriptome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
FwDRAFT_1001579813	F042904	GGAG	VQGCLIWLVPLMDSKQTVLEGIIEEVATDLYNKWSAALPEHERNQEAFSALSSNAHETTFFVIQNFMDRFNQAAEELKDK*
FwDRAFT_100157985	F014140	AGG	MKTYLIKLSVDIEIEAFNEDDAKEYLLDIFNVDDEIKKVGIVKIIEK*
FwDRAFT_100157987	F000473	AGG	MANYLDKDKDHFKHGINHWTGEPNKPVFYNKEMSLAVRGIKKPVGNLQMDIIKYPEFLCLRLYEDNFIQFTGNKKEMVIDYLQKVKKVIESYGVRCELEGVPSRNVLGKGI*
FwDRAFT_100157988	F000671	AGGA	LEKILCYCCNKSKNKLNLKPSALLSINLLMCETCISSKIEPRWVVILAGRANGPDHVRDFILKRRYLGDEITASELII*