Scaffold FwDRAFT_10000366

Overview

Basic Information

• Taxon OID: 3300000882
• Scaffold ID: FwDRAFT_10000366
• Source Dataset Name: Freshwater microbial communities from the Columbia River
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Maryland
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13544
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (36.84%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium Cent15-Ar3 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients

Source Dataset Sampling Location

• Location Name: Columbia River freshwater tidal region
• Coordinates
  • Lat. (^o): 46.18
  • Long. (^o): -123.18
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005206	Metagenome / Metatranscriptome	408	Y
F016253	Metagenome / Metatranscriptome	248	Y
F016961	Metagenome / Metatranscriptome	243	N
F048938	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
FwDRAFT_1000036610	F016961	AGGA	MHDPMNTALTIMGMAVLLPLCVIAGIYVGHSLTIRSQQTKTNEQNNRSL*
FwDRAFT_1000036613	F016253	GGAGG	MSDKIKSFIDSGTGVYSISKKEAGEIHKAAKKVKNYAFSYWTRNRKNKEVK*
FwDRAFT_1000036614	F048938	AGGAGG	MNIEETKECIRVMQAFVDGKDIEVFGPVGKWEPVHFPRWGWDDTQYRIKPIATIRPWTADEVPLGAWLRTTGYNHNNRRTLICATYDESTRSLWFSESEHSIDNGKTWLPCGVMEESK*
FwDRAFT_100003668	F005206	N/A	MTFKVDRASAEVKPFAAPGEYTVTVNSCKDDGLDKSGNAVATLRYKGPAGEVISDRFVLKDTMMWRLQALISATEANIADGDEFDFSIGGAFLRFLQGFVGLSLVIVIEEEKYIDKQGAEQTTFRVKRMKKVPADLDAI*