Scaffold FwDRAFT_10000226

Overview

Basic Information

• Taxon OID: 3300000882
• Scaffold ID: FwDRAFT_10000226
• Source Dataset Name: Freshwater microbial communities from the Columbia River
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Maryland
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6629
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (78.26%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients

Source Dataset Sampling Location

• Location Name: Columbia River freshwater tidal region
• Coordinates
  • Lat. (^o): 46.18
  • Long. (^o): -123.18
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002489	Metagenome / Metatranscriptome	554	Y
F002598	Metagenome / Metatranscriptome	544	Y
F003690	Metagenome / Metatranscriptome	473	Y
F004431	Metagenome / Metatranscriptome	438	Y
F019325	Metagenome / Metatranscriptome	230	Y
F024319	Metagenome / Metatranscriptome	206	Y
F097310	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
FwDRAFT_1000022611	F024319	AGG	MTNRIWESRNDYQNESDAMRLGYVTCSAGCGRVTAWSLCVMCGGNYATHNLVGKGSN*
FwDRAFT_1000022612	F019325	AGG	MTILTEELYSTIVHDFHNGGVKSSYGLNAYTRKALLRDLLSSKACYCINCLCEVTH*
FwDRAFT_1000022613	F004431	AGGA	MTITYSLWDGAQLLGVNFTATSADEMNKVVADLQKVSKGVVAHMRKVEQN*
FwDRAFT_1000022615	F003690	GGA	MTISGFELVVSNEYGIEFDSFLGAIYLPWHTIIITALLVTAYKIYKRKKNK*
FwDRAFT_1000022617	F002598	AGAAGG	MATKLYTIENLLIGKNYRSNSRHFSGEIVSAEHRPEIWYGEKTEAYLIEIRAGGLRNKFATIAVKVGE*
FwDRAFT_1000022620	F097310	GGA	MAKMKELLDEILNCDLCNGKGWVFFGNAKEYDVESCECNPNELEVNY*
FwDRAFT_100002266	F002489	AGGA	MQEDQNKESSDLEDNLPLVTYIMLHRIYDLLTLISNKLVGSEDTAKMVEYHEKGYLLGPVPSFVPNNEEEIK*