Scaffold JGI10215J12807_1189650

Overview

Basic Information

• Taxon OID: 3300000881
• Scaffold ID: JGI10215J12807_1189650
• Source Dataset Name: Soil microbial communities from Great Prairies - Wisconsin Restored Prairie soil
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1012
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_65_29 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location

• Location Name: Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.303611
  • Long. (^o): -89.332778

Associated Families

Family	Category	Number of Sequences	3D Structure?
F083400	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
JGI10215J12807_11896502	F083400	GGAGG	MQSNEHTAIGTISDVTKSLERVESGSPSLSVALPLLSPGTHITVHTRNTCYRMEVMDGSARRVMISGGLLFPKGDEVEVIGATDDEGVRVGWIVEGLQIELSTVRGPVLTSIVESLSVRQREG*