Scaffold JGI10215J12807_1089517

Overview

Basic Information

• Taxon OID: 3300000881
• Scaffold ID: JGI10215J12807_1089517
• Source Dataset Name: Soil microbial communities from Great Prairies - Wisconsin Restored Prairie soil
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1037
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location

• Location Name: Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.303611
  • Long. (^o): -89.332778

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037827	Metagenome / Metatranscriptome	167	Y
F072562	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI10215J12807_10895171	F037827	AGCAG	MRSFLTYLSERCKWASKGTGAVCGWVSLIVGATVAVLLWFYPRWFHDHISDRMNACVLVMVPLLAGASLFLVRWFVSPYPIYMQVRRTLDTLTDTKKEQRAKVVHGCFERSAAILKQHPSVLLSFHALSRAEGHRLESNQ
JGI10215J12807_10895173	F072562	N/A	GICREHCQISNKEALMKNKKHYVMTSAGTLTQSGLLAVLLQRQRYKVIELARRRAHREQARAAFRSTLNWLLAFAHGGIAGRPLRRGFEESVPRHT*