Scaffold JzSedJan11_1003951

Overview

Basic Information

• Taxon OID: 3300000866
• Scaffold ID: JzSedJan11_1003951
• Source Dataset Name: Hot spring sediment from Jinze in Tengchong, China
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Stanford University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15305
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (82.14%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Springs Sediment → Hot Springs Sediment Microbial Communities From Tengchong, China, Analyzing Pire Metagenomes

Source Dataset Sampling Location

• Location Name: Baoshan, Yunnan, China
• Coordinates
  • Lat. (^o): 25.44138
  • Long. (^o): 98.46004

Associated Families

Family	Category	Number of Sequences	3D Structure?
F103293	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
JzSedJan11_10039511	F103293	AGG	MQLETLKELPRPYEIYEFVPCHPADFRIIRYEIGKITITPKWPGAPTTKTIPAIRLHVDPATKPTFPHYWDITPTRLVHQLAAMLTAQFEPGKTIRIHRDIPGPKAHFSVMWI*