3300000866: Hot spring sediment from Jinze in Tengchong, China

Overview

Basic Information

• IMG/M Taxon OID: 3300000866
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0085294 | Gp0056413 | Ga0011730
• Sample Name: Hot spring sediment from Jinze in Tengchong, China
• Sequencing Status: Permanent Draft
• Sequencing Center: Stanford University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 94676878
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	5

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Hot Springs Sediment Microbial Communities From Tengchong, China, Analyzing Pire Metagenomes
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Springs Sediment → Hot Springs Sediment Microbial Communities From Tengchong, China, Analyzing Pire Metagenomes

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → hot spring → sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Sediment (non-saline)

Location Information

• Location: Baoshan, Yunnan, China
• Coordinates
  • Lat. (^o): 25.44138
  • Long. (^o): 98.46004
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013170	Metagenome	273	Y
F020112	Metagenome	226	Y
F025877	Metagenome	200	Y
F038537	Metagenome	165	Y
F079345	Metagenome / Metatranscriptome	116	Y
F103293	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JzSedJan11_1002476	Not Available	993
JzSedJan11_1003951	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	15305
JzSedJan11_1008618	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	5869
JzSedJan11_1008942	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	4606
JzSedJan11_1012069	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	753
JzSedJan11_1014421	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	5244

Sequences

Scaffold ID	Protein ID	Family	Sequence
JzSedJan11_1002476	JzSedJan11_10024762	F020112	IKGELQMISRAFRKCVELVEEMLSRGYRLQIPSTEVERLIKIGVGADKRTVQKYMRMLTEDLGFLKTAAKNPLGVVIYRIDVEAIEQFVGEHLKDKLRQLKLSDIRLEQNSIEEEVKTEKI*
JzSedJan11_1003951	JzSedJan11_10039511	F103293	MQLETLKELPRPYEIYEFVPCHPADFRIIRYEIGKITITPKWPGAPTTKTIPAIRLHVDPATKPTFPHYWDITPTRLVHQLAAMLTAQFEPGKTIRIHRDIPGPKAHFSVMWI*
JzSedJan11_1008618	JzSedJan11_10086183	F013170	VNTMSVHLHTTITRKANEILEELAKTYGTKSRALEKALETLLRVDKVGSCDDCAIKAKVNEQTKLREALDLASISRRNLDSLLEIAIGNKTIEDFMKEQKAEAKNTIEILKSSINWKPPSNFKEFLIVLEEIRNLTNMYDIPSYSEIDNIAILRPKVFKRLPIIVAFHTATILEGIGVYFDIRVMGEDIAVKMVRPEVYPLRKKEFGEFLEQQVENELAKVTPGLFKGTLMLVGPAFMSWAEKHLEEPISDLGNLLEDARIVLGVDEFPKEPKDFVKALLSAFVKMNWFKQAKVLIEKDENVLELVFQAALPSITRISTAALSVMLATRGWKTLNYTTEHTTVNMTIQYVGAEDQSLLDQLAELSLFQVIGKQFLDVIPIPRDLFNSFALKVYESDKRKFEEIYRATGTRISNAIRMLARNDSERIKRLAKSFILKNINATQPDAEVRFVDDEHFTIIFKRIDPLVMNSQRVLIESMFRELGYEIITTTFQNLLSFKLKLLEKPVLEPLPRKKLMQTLIEGMSCNSVEEAFAIEKEQLDELFPDDYPWTIREVGERITDMYRELGIEVEIEYFEGGFTLKYKSCPYYRLVKTGQKTWLCSLRKKTIEYIISRVSHGKKGKIKIIKSLLQNEHPCEYAIFLTGFLEKEEKAEA*
JzSedJan11_1008942	JzSedJan11_10089423	F038537	MRRSVYVWRELAPLVLRFCRESGICFNEVVNRAISGFLGSCDVERLRLEARLDVLLREEARLRRVCNAMLRSGSYLPGYVRRVLREPGRSLSHLPDPQRPLKALNPREERVFRRIVARREQIAREIAEIEEQLLQDVKPFRLKPDLHGRSRSRRRLCDKKGLKEVKKPNGETA*
JzSedJan11_1012069	JzSedJan11_10120691	F079345	MLSKALNLELEDLSVLQRKLLLELVHRKYPHYWGKFTSHEYSWQSRKEALEEFLQNHQTELVEEFAKSGLHGNGWKTTRKGGIHV*
JzSedJan11_1014421	JzSedJan11_10144219	F025877	MPGLDETENTFRYRVQNPDKFDRFRVKEITHGVKITLGRVKGTSRWEIQNYIFDKKLFRTREQVQKWLEKHLKSEVKTLLDFNAWNEHRKRLLQVYLEISKIA*