Scaffold JzSedJan11_1002476

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JzSedJan11_1002476

Scaffold JzSedJan11_1002476

Overview

Basic Information
Taxon OID	3300000866 Open in IMG/M
Scaffold ID	JzSedJan11_1002476 Open in IMG/M
Source Dataset Name	Hot spring sediment from Jinze in Tengchong, China
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Stanford University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	993
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Springs Sediment → Hot Springs Sediment Microbial Communities From Tengchong, China, Analyzing Pire Metagenomes

Source Dataset Sampling Location
Location Name	Baoshan, Yunnan, China
Coordinates	Lat. (^o)	25.44138	Long. (^o)	98.46004	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020112	Metagenome	226	Y

Sequences

Protein ID	Family	RBS	Sequence
JzSedJan11_10024762	F020112	N/A	IKGELQMISRAFRKCVELVEEMLSRGYRLQIPSTEVERLIKIGVGADKRTVQKYMRMLTEDLGFLKTAAKNPLGVVIYRIDVEAIEQFVGEHLKDKLRQLKLSDIRLEQNSIEEEVKTEKI*

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