NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI10213J12805_10019313

Scaffold JGI10213J12805_10019313


Overview

Basic Information
Taxon OID3300000858 Open in IMG/M
Scaffold IDJGI10213J12805_10019313 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Wisconsin Native Prairie soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)905
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameWisconsin, USA
CoordinatesLat. (o)43.312222Long. (o)-89.370833Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F052691Metagenome / Metatranscriptome142Y

Sequences

Protein IDFamilyRBSSequence
JGI10213J12805_100193133F052691N/AGGKKRRPSCNGTDTGCNITRRASGLTSLRCLGTRTMEESIQKVLQMAVDVFHWCYLPHEGIDFYVVSCSQQVFFMLTGPSHGL*

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