Scaffold AP72_2010_repI_A100DRAFT_1022176

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold AP72_2010_repI_A100DRAFT_1022176

Scaffold AP72_2010_repI_A100DRAFT_1022176

Overview

Basic Information
Taxon OID	3300000837 Open in IMG/M
Scaffold ID	AP72_2010_repI_A100DRAFT_1022176 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A100
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	892
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Amazon Forest, Brazil

Source Dataset Sampling Location
Location Name	Amazon forest, Fazenda Nova Vida, City of Ariquemes, State of Rondonia, Brazil
Coordinates	Lat. (^o)	-10.171667	Long. (^o)	-62.7875	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001044	Metagenome / Metatranscriptome	794	Y
F086013	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
AP72_2010_repI_A100DRAFT_10221762	F001044	AGGGGG	MTHIDQDLSAAXYLLGFSLLRGDLGEIAEIKGEMTIKLVHPPGEELKFVVELPGDTQMTFSVDRHQIVDLAESLKLTRN*
AP72_2010_repI_A100DRAFT_10221763	F086013	N/A	DMTHIDQDLSAALYLLGFSLLRGDLGEIAEIRGAT*

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