Scaffold JGI12421J11937_10042023

Overview

Basic Information

• Taxon OID: 3300000756
• Scaffold ID: JGI12421J11937_10042023
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1546
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035764	Metagenome / Metatranscriptome	171	Y
F045752	Metagenome / Metatranscriptome	152	Y
F091936	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
JGI12421J11937_100420232	F045752	N/A	MADPNQTPARGNWVCPCSGCSKAVAFERDNLVELILLHKAEYLIYRGSSFDTEGNLMWAKDDALAYSEGLDYVVKLIEDRKPKPKKKG*
JGI12421J11937_100420233	F035764	GAG	MTVIKTALRIGRNGIKQMIDKLISILFKWTGFREALFAEVNMYNSLTRIMKDPKSMEIASAFWEELDGWKGWTVEENKYYFNDIPEHDLMGVMESLEEMTNR*
JGI12421J11937_100420234	F091936	GAG	MTNPDRDRSMRLKRVIEEMXKDIDMSGEEWNDRDKDGVAYWEKWHKADDR*