Scaffold JGI12421J11937_10004226

Overview

Basic Information

• Taxon OID: 3300000756
• Scaffold ID: JGI12421J11937_10004226
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5730
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (26.67%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009600	Metagenome	315	Y
F010908	Metagenome / Metatranscriptome	297	Y
F011218	Metagenome / Metatranscriptome	293	N
F014228	Metagenome	264	N
F015723	Metagenome / Metatranscriptome	252	Y
F025437	Metagenome	201	N
F039112	Metagenome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12421J11937_1000422611	F014228	N/A	MNSKLNPNRLAMWPILLTATLAVVSSCATVKPVLESVIVRDTVIVTKTKYLTDTLELFKDTTIYQDKVRLQLQYIDRKVFVEATCLPDTIRVTQTKILTKERKQRGWTLEGAAVTLGLILVVAYFIKKWIDKLVE*
JGI12421J11937_100042262	F025437	GAG	MQMRPFEIRQLKVSKEQYYARLGFQDNGSRAHKESTARAAFVSAFRNHATLHELGEAIDKDHSSVAYAVRMHQSRLIYGDYQHYYKVACCVLEENPMACIDKPDFQSLELELNKLNEVVCELSKYKELYLTLKRTFDEF*
JGI12421J11937_100042263	F010908	GAGG	MKQIFSPFQKYECFEVDGVDYLVVDYTIVQDKDDNLVEWASEMKFKRLKDHKHFTMPITKVITNHKEGRARLCKCK*
JGI12421J11937_100042266	F015723	N/A	MSKIISITPTGQWQDLFKLEVRFDNGDFGTAFAKSQTPPYAVGDEVEYTKNEKGTIKIQRPNPYGASTGGGYTQSAPSFAPKGNDDRSASIIRQVALKAAVEYACAAQHDVNTILANAETFNAWMTGQSAAPASHTEHFANRNDPF*
JGI12421J11937_100042267	F039112	N/A	MTLSFSSDVYTEMVQVQQAQIQALQNKIQELEARIDVLEQQSILFI*
JGI12421J11937_100042268	F009600	N/A	MRILDPRQLSYKIVVGKVPSLNAFYASRHWTVRKNAKDKHCDEVLEQLYAMDCVQITDVHITCLVNYRYDVDNSIMVVKFALDAFKKWGAIRDDSPKYVKQIILVHSEAIAKDTAEIIFEGVIVE*
JGI12421J11937_100042269	F011218	N/A	MQYYTNPAKRRKIDFILEECATLMSNCEATYNARQQAKYKEQELLGEIAKIDLHFAIQCGYLIPDN*