Scaffold JGI12421J11937_10003086

Overview

Basic Information

• Taxon OID: 3300000756
• Scaffold ID: JGI12421J11937_10003086
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6699
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (61.11%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001280	Metagenome / Metatranscriptome	732	Y
F006846	Metagenome / Metatranscriptome	363	Y
F014017	Metagenome / Metatranscriptome	266	Y
F020166	Metagenome / Metatranscriptome	225	Y
F028166	Metagenome / Metatranscriptome	192	Y
F045752	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12421J11937_1000308610	F006846	AGGA	MLIEFVERYLMRPKRLRMAIQAVVRDNDELLRTIKEYEEDDTPTNLTWSEGDRWYGWTFNRSNSRYYFDDIGNESLMGLWEDQWAREADENGRSKSNTSQG*
JGI12421J11937_1000308611	F020166	N/A	MKEPKIMKMDWRSLGYWPVYKDGKLTWEKDPDKNVN*
JGI12421J11937_1000308614	F001280	GGCGG	MCIECGCESVGSESGIIPVIVTDVSRDGEAGLTLSMTSTPEQTRQFINE*
JGI12421J11937_1000308615	F028166	AGGAG	MSDGKDLNGFNELQAGASNSLDLNPTGQAPASAFPATDKSTQDGSGLGNGGK*
JGI12421J11937_1000308617	F014017	AGG	MDKLVEYLDESYRKKIADQIRYLELPPDWKPYEVIRYIVRIIEKNNG*
JGI12421J11937_100030869	F045752	GAGG	MADPNQTPARGSWVCPCSGCSKAVAFERENLVELILLHKAEYLVYRGSSFDAEGNLLWAKDDASAYAEGIDYVVKLIEDRKPKPKKKG*