Scaffold JGI12421J11937_10002811

Overview

Basic Information

• Taxon OID: 3300000756
• Scaffold ID: JGI12421J11937_10002811
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7008
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (73.68%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003582	Metagenome / Metatranscriptome	478	Y
F023339	Metagenome / Metatranscriptome	210	Y
F037227	Metagenome / Metatranscriptome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12421J11937_1000281118	F003582	GGA	MKTYLIKLEVEAHIQAFSEDDAKDYINDIFGVDEEVKNVKIVSVKEK*
JGI12421J11937_1000281119	F023339	N/A	GGEVCKQLRAYKKNKAGVLISIVGFGRPKFGATAKPAAKAATTKSKKCPTCGK*
JGI12421J11937_100028116	F037227	AGGAG	LDKQTTILEGIIEEIAVELYQKLWNAIPAEEQTEDSSRAIGLNSRETTIFVIQNFMNKFNAAADELKDQEEVLTPETHIVK*