Scaffold JGI12421J11937_10002511

Overview

Basic Information

• Taxon OID: 3300000756
• Scaffold ID: JGI12421J11937_10002511
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7386
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (80.95%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009531	Metagenome / Metatranscriptome	316	Y
F020910	Metagenome / Metatranscriptome	221	Y
F040623	Metagenome / Metatranscriptome	161	Y
F063708	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12421J11937_1000251110	F020910	GAGG	MWSKYTFVCDPDECDAMVEFTARDGFGFPLGSVEMTCPCGRKLNYISYEDAWEPILADVTKITPREVVKINTNPYN*
JGI12421J11937_1000251111	F040623	AGGGGG	MKVRISLEQTIDIDDAMSNDIGFELYGPPDMSTEDKVDYLMARFAEDIDTMVKYDEVLGNISIEYIED*
JGI12421J11937_1000251115	F009531	N/A	MTQQVAIYEMNYSCSPGGVDCWEATINGYGTSSTASDFKTAGEALNWVLDRHPDEMLELVVTSLPAYEKEYV*
JGI12421J11937_100025119	F063708	N/A	MDLNTFKEYINLHLISLEQDLEENPASIHVVDIEGQIYATKHLMEVLNER*