Scaffold JGI12421J11937_10000965

Overview

Basic Information

• Taxon OID: 3300000756
• Scaffold ID: JGI12421J11937_10000965
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11515
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (67.86%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008814	Metagenome / Metatranscriptome	327	Y
F011394	Metagenome / Metatranscriptome	291	Y
F014140	Metagenome / Metatranscriptome	265	Y
F021988	Metagenome / Metatranscriptome	216	Y
F066776	Metagenome / Metatranscriptome	126	Y
F072349	Metagenome / Metatranscriptome	121	Y
F105192	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12421J11937_100009651	F021988	N/A	MSNSFKKEDGTGMVPPANAGAPAGAVTSTNTPKRYPRQGVKIDTNKHGIRRETSLIPKPTKKPRHKKP*
JGI12421J11937_1000096514	F008814	N/A	MDNKLTVLEEIIKEIGEELYQKWYNALAIEDRTEEASKAMSANAGETAVWVIQTFMNKFNKAADELKGD*
JGI12421J11937_1000096519	F105192	N/A	MNIPLTEILITLFAAAISGLLTAQIGARRSKKEKAERQVEKAHDQLLLELKDLEIKLYKLEKDLNEWKDKYFEALQELIRVKAELEGTLLKLSHLEIHSDEH*
JGI12421J11937_1000096520	F072349	GAG	LKESQEEKIMDKVLCYSCNKSKNELSAKKSVLLPINLLLCKSCADNKLEPRWIVILAGRQYGSDHVKEHIAKKKYVGVDITASELLI*
JGI12421J11937_1000096521	F011394	GGA	MFIDKNKNHFKYGINEWTGEPNKPTFYTKEMALKIRELKKPTSTLEMDIVKYPDFLAIRLYENNFAQYDGSMRVRVIEYVEMVKNILESYGVRVELEGKPGGKNHG*
JGI12421J11937_1000096523	F066776	GGA	MLNLTEQGVEIFIKKFQSSVQKSFWNNYDLVIWKKDHGGYTDTKGMYYNNAWGKAEKISVDKKGIWKLPKKYVRYFK*
JGI12421J11937_1000096526	F014140	N/A	MNKYRIKLDVEVEVEAFNPEDASEYIHDIFNIDDEIKKVNIVKMQQK*