NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI12272J11983_1156268

Scaffold JGI12272J11983_1156268


Overview

Basic Information
Taxon OID3300000750 Open in IMG/M
Scaffold IDJGI12272J11983_1156268 Open in IMG/M
Source Dataset NameSoil microbial communities from Moab, Utah, sample - Soil Crust Dry out, 3 days (biological replicate A) D5A (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1401
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Desert → Soil → Soil Microbial Communities From Four Geographically Distinct Crusts In The Colorado Plateau And Sonoran Desert

Source Dataset Sampling Location
Location NameMoab, Utah
CoordinatesLat. (o)38.714694Long. (o)-109.692944Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F091161Metagenome / Metatranscriptome107Y
F094653Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
JGI12272J11983_11562682F091161GAGGVSARLLPVVRDLFGQHPPVARLSAEQRAGLLWKLRYVPDEEDSPPEPFEVADVLEVLDVERGLVA*
JGI12272J11983_11562683F094653AGGGGGVSAREVLEELDRLAISIFYRPLGGGPGTRIDVGVGRERVYPELLRAIEERTPELLKMARFEPSRHTPGTYLRRPGGLA*

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