Scaffold JGI12547J11936_1018017

Overview

Basic Information

• Taxon OID: 3300000736
• Scaffold ID: JGI12547J11936_1018017
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1724
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024040	Metagenome / Metatranscriptome	207	Y
F032536	Metagenome / Metatranscriptome	179	Y
F062447	Metagenome / Metatranscriptome	130	N
F104482	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
JGI12547J11936_10180171	F024040	N/A	AKVVLEKDIKKSDRYTEATTRAIESLLDQEEKEGVDLKVLDYDDYGLGLITLTYDEKDSKKEGEHRVMLTSNILANAGRWDDYKTIKDYEEKCKEEGL*
JGI12547J11936_10180172	F062447	AGGAGG	MKHKIFWEKNSRVKGVVPSAQIINKTSTDKFPCDAVTIRMYNLNDKNPTATAYFYGKEAQGSSWNGSNYTYAETKLMVTFNKDKEGYSFNGGAKSFSLQDIKEVLDSVRETLNKL*
JGI12547J11936_10180173	F032536	N/A	MSERKTFEELMRSFRFHKNPIINWFLGEVNYYSHTYLNVKWGLKNKLQRLIRGYSDSDCWNLPQAIAKFILPRIKHLRKNYNSLANRHHLIVDGKIVPYVGEQNNFEFNETLGCYKDKTTGMEISLDQKEYEYVLDEIIFALQMIVDEDNIDINLDRLYEVYPEGFDPIEDRQMFLTPQGDGTSLVEFESKDNIQPDYSKLNKAYERQRNGLLLLGLYFKDLWD*
JGI12547J11936_10180175	F104482	N/A	MKKIKKWKKEVTSEEFEKAMKAQGRFVSKVYYRIRYKDMGLYILNSFQFKLLPKFFYMNSKYFTECGFNWLGWIFEFQWSR*