Scaffold JGI12547J11936_1001083

Overview

Basic Information

• Taxon OID: 3300000736
• Scaffold ID: JGI12547J11936_1001083
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7618
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (54.55%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000671	Metagenome / Metatranscriptome	945	Y
F006846	Metagenome / Metatranscriptome	363	Y
F008814	Metagenome / Metatranscriptome	327	Y
F014017	Metagenome / Metatranscriptome	266	Y
F016396	Metagenome / Metatranscriptome	247	Y
F026561	Metagenome / Metatranscriptome	197	Y
F077310	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12547J11936_100108312	F014017	AGG	MDKLIEYLDENHRRKIADEIRYLELPPEWRPYEVIRYIVGIIEKKNGQASRQN*
JGI12547J11936_100108318	F026561	N/A	MSNFQKEDGTGMTPPTGAGSASGAVTSREATRKYPKQGIKPRMKIDVNSHGIRRETSLDPKPKKTRPKKV*
JGI12547J11936_10010832	F000671	GAGG	MEKILCYCCNKTKNKLNVRKSILMPINLLMCETCISSKFEPRWVVILAGRQLGSEAVKEFIIKKRYXGNDIIASELLV*
JGI12547J11936_100108321	F006846	N/A	MLTDLVERYLMRPKRLREAIQAVVHDNDELLRIIKEHEQDDTPTNLTWSEGDRWYGWTYNSNAKRYYFDDIGNESLMGLWEDQWAREKEVAKSSLFENQVDFE*
JGI12547J11936_10010833	F077310	N/A	MSMDANSVIIVIIASVLSGIGTAMFNGIKESRREKSRKIEREQDLLKMELKDLEIKLYKLEKDLIEWRDKYYNAIQELIEVKGELENCLVELSHIAHHED*
JGI12547J11936_10010836	F016396	N/A	MQVVRLEMMVELYTQSLTNLLQSQGLQTPTNLDAGKWYKAKLDTLDNE*
JGI12547J11936_10010838	F008814	N/A	MADQLTILEEIIKEIGEELYQKWYNALAIEDRNEESSRAMSVNAGETAFWVVQTFMNKFNSAADELKGE*