Scaffold JGI12547J11936_1000948

Overview

Basic Information

• Taxon OID: 3300000736
• Scaffold ID: JGI12547J11936_1000948
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8082
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (42.86%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006138	Metagenome / Metatranscriptome	380	Y
F012113	Metagenome / Metatranscriptome	283	Y
F012433	Metagenome / Metatranscriptome	280	N
F014487	Metagenome / Metatranscriptome	262	Y
F019290	Metagenome	230	Y
F045612	Metagenome	152	Y
F090073	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
JGI12547J11936_10009481	F012113	N/A	MEQILTFIQSQDVFAWVGALVALLSAVIAIASLIPGDEPETTLRKVVDFLSKFSRK*
JGI12547J11936_100094810	F006138	GAGG	MPAVTVGNAGLVFGLSTETIGLVQSFSETRNVEKNEIRNASGDVSGIGYYNPTTAYSLSVAITGANTSLTVGGAFASLANATTVGTCRIDSIALNKTNTGFVTLDISATGYPNVS*
JGI12547J11936_100094811	F012433	GAGG	MSADQVADLRERLARIEERQVNLIAVLERHTSEIAEWTGRMNGKVDTLERDAHTIKTKLWLVALISGAVFSTIWELIKVRVFPR*
JGI12547J11936_100094812	F045612	N/A	MKYQYTYEDFVYSLKWLCDEGYIEKFIDEDGNTCVRICEGAEDCEV*
JGI12547J11936_100094813	F014487	N/A	MPLLLLTLFFCSCSPRHTDNNALPNYEMMQAAEDAGKTPSK*
JGI12547J11936_10009488	F090073	AGG	MNNILDDELNGSFVKPSRDYKGEAIADYTEGSRLLMLQCKEPQDSSVYFVWAFLYIHILIAKNRKEAIKLAWNRDEFRDKLLGWIEDKTEEDRAVATNIVSEMIEEASRAKVSVVLSGNIASGND*
JGI12547J11936_10009489	F019290	N/A	MEGSSYWGTTNIKVASAVAAFGGTLRQADPVTHIVREDGSKQITFWFNSGGSGSIAKKEMEAKWSEMTSDQEAPIRYVRAALENRETLLGLVKRAEPIQIIKRGGQTLLVPVNAKPELKRAILRAM*