Basic Information | |
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Taxon OID | 3300000597 Open in IMG/M |
Scaffold ID | AF_2010_repII_A1DRAFT_10012871 Open in IMG/M |
Source Dataset Name | Forest soil microbial communities from Amazon forest - 2010 replicate II A1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2304 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Amazon Forest, Brazil |
Source Dataset Sampling Location | ||||||||
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Location Name | Amazon forest, Fazenda Nova Vida, City of Ariquemes, State of Rondonia, Brazil | |||||||
Coordinates | Lat. (o) | -10.171667 | Long. (o) | -62.7875 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000461 | Metagenome / Metatranscriptome | 1108 | Y |
F002604 | Metagenome / Metatranscriptome | 544 | Y |
F076826 | Metagenome | 117 | Y |
Protein ID | Family | RBS | Sequence |
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AF_2010_repII_A1DRAFT_100128711 | F076826 | N/A | MEVEMEGAEHDDLEMSFRRGYQQGATEVFYAIERFLDPATREVVRAWIEKDVYTWRVKAMLG |
AF_2010_repII_A1DRAFT_100128712 | F000461 | AGCAG | MMALTAMDKLLFWLGIGAAQKGAGSNKRTDSRHWVISLVAGILLALLIATGAFILLVSQR |
AF_2010_repII_A1DRAFT_100128713 | F002604 | GGAGG | MLGKLWTIGAVATILMVPTAPFAQVGGAINSGVHVGGAVNPGATVRGAVERGIPGPDMGTWRSPSGVIHRSRKHSMAATKQRR* |
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