Scaffold TCEJC06_1000388

Overview

Basic Information

• Taxon OID: 3300000591
• Scaffold ID: TCEJC06_1000388
• Source Dataset Name: Groundwater microbial communities from well in New Jersey, USA, that are chlorine contaminated, sample 1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of California, Berkeley
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5835
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Drinking Water → Chlorinated → Groundwater → Groundwater Microbial Communities From Well In New Jersey, Usa

Source Dataset Sampling Location

• Location Name: New Jersey, USA
• Coordinates
  • Lat. (^o): 39.86
  • Long. (^o): -74.34

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030981	Metagenome	183	Y
F096529	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
TCEJC06_10003882	F096529	GGAG	VKRKDFIEGFEPQIVRISGKPKVIGYIKGNTFRSVVKYSKHVLYKREGRPPAIAKEAWVYRNLIRPRCRLWEVFDEERNLLLRTTIAKFDAHCEEWHHNDLVQLLLEEPYWQIERLGPPKLTQGKLF*
TCEJC06_10003883	F030981	AGGAG	MGKVRRCDKRCHTAKGIRCKCWCGGFFHGSAGASNRAALAQGATELLEEHGFKKDATAYVGQEELPMKDLPGAEAR*