Scaffold AF_2010_repII_A01DRAFT_1037593

Overview

Basic Information

• Taxon OID: 3300000580
• Scaffold ID: AF_2010_repII_A01DRAFT_1037593
• Source Dataset Name: Forest soil microbial communities from Amazon forest - 2010 replicate II A01
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 752
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Amazon Forest, Brazil

Source Dataset Sampling Location

• Location Name: Amazon forest, Fazenda Nova Vida, City of Ariquemes, State of Rondonia, Brazil
• Coordinates
  • Lat. (^o): -10.171667
  • Long. (^o): -62.7875

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000846	Metagenome / Metatranscriptome	862	Y
F004504	Metagenome / Metatranscriptome	435	Y
F064164	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
AF_2010_repII_A01DRAFT_10375931	F004504	N/A	EMTRIALGLADHYADGIIAKRVVELAKAWERNSDLLCEGALKQLRGAM*
AF_2010_repII_A01DRAFT_10375932	F000846	GGAGG	MTHLIDKNLVERANTVLLLGILWAALAVCVLGALAYDILNLLEGW*
AF_2010_repII_A01DRAFT_10375933	F064164	N/A	PAKVINLMDALRRSVETERGAKRQAPSAKARSSESERPKKKKSR*