NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold AF_2010_repII_A01DRAFT_1005263

Scaffold AF_2010_repII_A01DRAFT_1005263


Overview

Basic Information
Taxon OID3300000580 Open in IMG/M
Scaffold IDAF_2010_repII_A01DRAFT_1005263 Open in IMG/M
Source Dataset NameForest soil microbial communities from Amazon forest - 2010 replicate II A01
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2094
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Amazon Forest, Brazil

Source Dataset Sampling Location
Location NameAmazon forest, Fazenda Nova Vida, City of Ariquemes, State of Rondonia, Brazil
CoordinatesLat. (o)-10.171667Long. (o)-62.7875Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000792Metagenome / Metatranscriptome890Y
F001440Metagenome / Metatranscriptome694Y
F001673Metagenome / Metatranscriptome654Y
F033728Metagenome / Metatranscriptome176Y

Sequences

Protein IDFamilyRBSSequence
AF_2010_repII_A01DRAFT_10052631F000792GAGGMRERVLLFCLLGLVLTATILLVIAPGAVTWALALIE*
AF_2010_repII_A01DRAFT_10052633F033728N/AMGADNQAESVPERKRLSAIAKIKQDLAWRSVTGVLREHIVLTRQQAEELVAEFERFSSQGGKSDLGGGLLDRGDGGQKTEAR*
AF_2010_repII_A01DRAFT_10052634F001440GAGGMTKAKSIGWAIYVAGFVIWLFGYLSTGHAAAFDWDGAAPSWISSFVPNLEAEFGLALMFTSMIPIYWRTGRKRP*
AF_2010_repII_A01DRAFT_10052635F001673GGCGGMASFVAVLLVLALGHRWSVTASWFASDKTCRERHATPWLVERLAIDCDRLLRERLWKLYDEGFGRLRGGRGAFDHMKQLEHPDE*
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