Scaffold RepKanNP_BrdU_F12BDRAFT_1002980

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold RepKanNP_BrdU_F12BDRAFT_1002980

Scaffold RepKanNP_BrdU_F12BDRAFT_1002980

Overview

Basic Information
Taxon OID	3300000564 Open in IMG/M
Scaffold ID	RepKanNP_BrdU_F12BDRAFT_1002980 Open in IMG/M
Source Dataset Name	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.2B
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	1030
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From Kansas Great Prairie, Usa, Amended With Brdu

Source Dataset Sampling Location
Location Name	Kanza Prairie, Kansas, USA
Coordinates	Lat. (^o)	39.100992	Long. (^o)	-96.608258	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F042788	Metagenome / Metatranscriptome	157	N

Sequences

Protein ID	Family	RBS	Sequence
RepKanNP_BrdU_F12BDRAFT_10029802	F042788	AGGAG	MNMRPLIAGFVVAEIVLNATSLVGQTLDIKPPTTGPEIRPDHDQRRKEKSSVARPGLNEPHFISPFSVKTDAGQLGIAGWTSTNPNVPPGHSLSGDGAGSLGFGVAAEWGARPRSERALIR*

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