Scaffold F14TC_100242692

Overview

Basic Information

• Taxon OID: 3300000559
• Scaffold ID: F14TC_100242692
• Source Dataset Name: Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1672
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From Kansas Great Prairie, Usa, Amended With Brdu

Source Dataset Sampling Location

• Location Name: Kanza Prairie, Kansas, USA
• Coordinates
  • Lat. (^o): 39.100992
  • Long. (^o): -96.608258

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011452	Metagenome / Metatranscriptome	291	Y
F066680	Metagenome / Metatranscriptome	126	N
F087416	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
F14TC_1002426921	F011452	N/A	VECAIKSATIMSQYKGHPIYGIAVAASGHRWGVRGLVFDRDLNQTIEIKRIETSTELTFRARRPAEEYGLKLCRDWIDEQTAVAI*
F14TC_1002426922	F087416	AGGAGG	MTEDKNWKILQIIPAQPGWKAVHCEGLEHAEMKISNRSIVCWALVESVGGSAVGQREVRGIEQNANDLTVVDDVIDIDEVGEDDTDRNQYFLGYNDPEAHKESDYWIKHGNDRFRTVKEKRLTKQRGQAALRVASQEEGLSAQR*
F14TC_1002426923	F066680	AGG	MATLPNKREVLQSILDQQDDLWIVMKPSRNDPVDPEDLCVFQNPGRWKEARVEIPISWFLNQELEKIESAVLDAIEHAESGYKYI*