Scaffold Draft_10374927

Overview

Basic Information

• Taxon OID: 3300000558
• Scaffold ID: Draft_10374927
• Source Dataset Name: Wastewater microbial communities from Syncrude, Ft. McMurray, Alberta - West In Pit SyncrudeMLSB2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: McGill University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2814
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa

Source Dataset Sampling Location

• Location Name: Syncrude, Ft. McMurray, Alberta
• Coordinates
  • Lat. (^o): 57.02
  • Long. (^o): -111.55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F018135	Metagenome	236	Y
F029046	Metagenome	189	Y
F086805	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Draft_103749272	F000821	AGGAG	MNREYLEAKVDLCLNQAEIDLKQEEIARAITNLRRANSALTQLFGFEEEENE*
Draft_103749274	F029046	AGGAGG	MQLQEIDTLQDLKLWVEENMPGARVTVDSAGTLVIHTNLISTMGGYLHEREGEE*
Draft_103749275	F018135	AGG	MTVERVRHSGAYILSDFVGEGRGEYLFTRTYYGYTLKQAKAQFKIALKEAK*
Draft_103749278	F086805	GAGG	VRELSKRGNLVAGIAIGLLIAGIVWVSGNLWYVPGEGYCPGSMVECYGKEFTR*