Scaffold PR_CR_10_Liq_3_inCRDRAFT_1030644

Overview

Basic Information

• Taxon OID: 3300000517
• Scaffold ID: PR_CR_10_Liq_3_inCRDRAFT_1030644
• Source Dataset Name: Marine microbial community from Cabo Rojo, Puerto Rico - PR CR 10% Liquid 3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 896
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Parvibaculaceae → Parvibaculum → unclassified Parvibaculum → Parvibaculum sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Enviromental → Environmental Microbial Communities From Fremont, Ca And La Paraguera, Puerto Rico

Source Dataset Sampling Location

• Location Name: Cabo Rojo, Puerto Rico
• Coordinates
  • Lat. (^o): 17.950617
  • Long. (^o): -67.193417
  • Depth (m): .05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046336	Metagenome / Metatranscriptome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
PR_CR_10_Liq_3_inCRDRAFT_10306444	F046336	N/A	CREGADATGDMYVRYFGESSFTVGHSFEVSGAGGEYTYDFPVPLRIPEKSDIDVRASVRSNNARITAAFDILLEAE*