Scaffold PR_CR_10_Liq_3_inCRDRAFT_1001216

Overview

Basic Information

• Taxon OID: 3300000517
• Scaffold ID: PR_CR_10_Liq_3_inCRDRAFT_1001216
• Source Dataset Name: Marine microbial community from Cabo Rojo, Puerto Rico - PR CR 10% Liquid 3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 6793
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Enviromental → Environmental Microbial Communities From Fremont, Ca And La Paraguera, Puerto Rico

Source Dataset Sampling Location

• Location Name: Cabo Rojo, Puerto Rico
• Coordinates
  • Lat. (^o): 17.950617
  • Long. (^o): -67.193417
  • Depth (m): .05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F098946	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
PR_CR_10_Liq_3_inCRDRAFT_10012162	F098946	AGGAG	MARITCRTPSTGKALRVTRANVPTSFTSLIDAPDFSVPDTSVKFAERDPTDDGRAIRPGEIFFLSPLAAYNKDAANTRWIEVRLVSEDGVTIEFARAEVPANDTAYIPLQGRSLFKRDPDAALGDRVEIRAEADNTFDVWSAVEEKLSNEHIGVV*