Scaffold ZC3D99_109655

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold ZC3D99_109655

Scaffold ZC3D99_109655

Overview

Basic Information
Taxon OID	3300000514 Open in IMG/M
Scaffold ID	ZC3D99_109655 Open in IMG/M
Source Dataset Name	Compost microbial communities from Sao Paulo Zoo, Brazil - ZC3D99
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Sao Paulo
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	584
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Solid Waste → Zoo Waste → Composting → Unclassified → Compost → Compost Microbial Communities From Sao Paulo Zoo, Brazil

Source Dataset Sampling Location
Location Name	Sao Paulo Zoo Park
Coordinates	Lat. (^o)	-23.651079	Long. (^o)	-46.620668	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F088555	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
ZC3D99_1096551	F088555	N/A	WMALRMYFDETVSSLVRDDISPTLGSPDTYEGPAEGGSVERKLYLYSDNFQRTYSNVQISALNTDADVQIHYALDQNGQPGTYQTNLQLPDGDYQTPVPVWVKVTFAPATEPTLRTDLRHWLQWLEAIAG*

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