3300000514: Compost microbial communities from Sao Paulo Zoo, Brazil - ZC3D99

Overview

Basic Information

• IMG/M Taxon OID: 3300000514
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0073241 | Gp0054481 | Ga0011589
• Sample Name: Compost microbial communities from Sao Paulo Zoo, Brazil - ZC3D99
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Sao Paulo
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 18198123
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
Not Available	2
All Organisms → cellular organisms → Bacteria → Proteobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Compost Microbial Communities From Sao Paulo Zoo, Brazil
• Type: Engineered
• Taxonomy: Engineered → Solid Waste → Zoo Waste → Composting → Unclassified → Compost → Compost Microbial Communities From Sao Paulo Zoo, Brazil

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Sao Paulo Zoo Park
• Coordinates
  • Lat. (^o): -23.651079
  • Long. (^o): -46.620668
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F059782	Metagenome	133	Y
F078430	Metagenome	116	N
F088555	Metagenome	109	N

Associated Scaffolds

Scaffold	Taxonomy	Length
ZC3D99_100177	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	7957
ZC3D99_105023	Not Available	1088
ZC3D99_109555	Not Available	609
ZC3D99_109655	All Organisms → cellular organisms → Bacteria → Proteobacteria	584

Sequences

Scaffold ID	Protein ID	Family	Sequence
ZC3D99_100177	ZC3D99_10017716	F088555	MALRMYFDETVSSLVRDDISPTLGSPDTYEGPGAGGTVERKLYIYSDNFQRTYSQVQLTSLNADAQVQLHYALDDNGSPGTWQTTVDLPDGDYRTPYPIWVRVTFAPTDEPTLRTDLRHWLQWLEASRGDLIGYSRAHQHGC*
ZC3D99_105023	ZC3D99_1050232	F059782	MRVEFNVARGRAVQGRGSQLAAFSVLLDIESEQLSVMERAELAQRLTVRFAQAIAEEFGGEEIEIRRSRE*
ZC3D99_109555	ZC3D99_1095551	F078430	MATMLGGVVLPRVYVQESEPDWAGKPIRRWTLRTRPLTWEQYVAIEEMVREVGVARSIERAVDGTPHALGASQVGFVLDEGGGQTTETAVYIT
ZC3D99_109655	ZC3D99_1096551	F088555	WMALRMYFDETVSSLVRDDISPTLGSPDTYEGPAEGGSVERKLYLYSDNFQRTYSNVQISALNTDADVQIHYALDQNGQPGTYQTNLQLPDGDYQTPVPVWVKVTFAPATEPTLRTDLRHWLQWLEAIAG*